Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KIL00_RS19090 Genome accession   NZ_CP075344
Coordinates   3641687..3643078 (-) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636687..3648078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS19055 (KIL00_19055) flgL 3636858..3637754 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  KIL00_RS19060 (KIL00_19060) flgK 3637765..3639288 (-) 1524 WP_213783463.1 flagellar hook-associated protein FlgK -
  KIL00_RS19065 (KIL00_19065) flgN 3639307..3639789 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KIL00_RS19070 (KIL00_19070) flgM 3639805..3640071 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  KIL00_RS19075 (KIL00_19075) yvyF 3640152..3640571 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  KIL00_RS19080 (KIL00_19080) comFC 3640645..3641367 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  KIL00_RS19085 (KIL00_19085) comFB 3641331..3641627 (-) 297 WP_003227989.1 late competence protein ComFB -
  KIL00_RS19090 (KIL00_19090) comFA 3641687..3643078 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  KIL00_RS19095 (KIL00_19095) fakBA 3643185..3644030 (-) 846 WP_014481053.1 DegV family protein -
  KIL00_RS19100 (KIL00_19100) degU 3644128..3644817 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  KIL00_RS19105 (KIL00_19105) degS 3644900..3646057 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KIL00_RS19110 (KIL00_19110) yvyE 3646274..3646927 (+) 654 WP_213783464.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=568949 KIL00_RS19090 WP_014481052.1 3641687..3643078(-) (comFA) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=568949 KIL00_RS19090 WP_014481052.1 3641687..3643078(-) (comFA) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981