Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KIL00_RS17135 Genome accession   NZ_CP075344
Coordinates   3252317..3252961 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247317..3257961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS17100 (KIL00_17100) mrpB 3248509..3248940 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KIL00_RS17105 (KIL00_17105) mrpC 3248940..3249281 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  KIL00_RS17110 (KIL00_17110) mrpD 3249274..3250755 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  KIL00_RS17115 (KIL00_17115) mrpE 3250761..3251237 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KIL00_RS17120 (KIL00_17120) mrpF 3251237..3251521 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KIL00_RS17125 (KIL00_17125) mnhG 3251505..3251879 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  KIL00_RS17130 (KIL00_17130) yuxO 3251918..3252298 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  KIL00_RS17135 (KIL00_17135) comA 3252317..3252961 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KIL00_RS17140 (KIL00_17140) comP 3253042..3255351 (-) 2310 WP_213783444.1 histidine kinase Regulator
  KIL00_RS17145 (KIL00_17145) comX 3255366..3255533 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  KIL00_RS17150 (KIL00_17150) comQ 3255521..3256420 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  KIL00_RS17155 (KIL00_17155) degQ 3256605..3256745 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KIL00_RS17160 (KIL00_17160) - 3256967..3257092 (+) 126 WP_003228793.1 hypothetical protein -
  KIL00_RS17165 (KIL00_17165) - 3257207..3257575 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=568941 KIL00_RS17135 WP_003220716.1 3252317..3252961(-) (comA) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=568941 KIL00_RS17135 WP_003220716.1 3252317..3252961(-) (comA) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1