Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KIL00_RS05770 Genome accession   NZ_CP075344
Coordinates   1116959..1117537 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111959..1122537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS05750 (KIL00_05750) hemAT 1112479..1113777 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  KIL00_RS05755 (KIL00_05755) yhfW 1113916..1115444 (-) 1529 Protein_1073 FAD-dependent oxidoreductase -
  KIL00_RS05760 (KIL00_05760) yhxC 1115548..1116405 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  KIL00_RS05765 (KIL00_05765) yhzC 1116433..1116666 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KIL00_RS05770 (KIL00_05770) comK 1116959..1117537 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  KIL00_RS05775 (KIL00_05775) yhxD 1117584..1118483 (-) 900 WP_069837408.1 SDR family oxidoreductase -
  KIL00_RS05780 (KIL00_05780) yhjA 1118700..1118969 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  KIL00_RS05785 (KIL00_05785) yhjB 1119013..1120482 (-) 1470 WP_014479374.1 sodium:solute symporter -
  KIL00_RS05790 (KIL00_05790) yhjC 1120479..1120679 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  KIL00_RS05795 (KIL00_05795) - 1120878..1121249 (-) 372 WP_014476361.1 hypothetical protein -
  KIL00_RS05800 (KIL00_05800) yhjE 1121401..1122024 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  KIL00_RS05805 (KIL00_05805) lepB 1122026..1122532 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=568898 KIL00_RS05770 WP_003245329.1 1116959..1117537(+) (comK) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=568898 KIL00_RS05770 WP_003245329.1 1116959..1117537(+) (comK) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1