Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KIP84_RS09625 Genome accession   NZ_CP075323
Coordinates   2018702..2019082 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter sp. BHS4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2013702..2024082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS09595 (KIP84_09600) tadA 2013769..2014269 (-) 501 WP_213688358.1 tRNA adenosine(34) deaminase TadA -
  KIP84_RS09600 (KIP84_09605) - 2014275..2015399 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  KIP84_RS09605 (KIP84_09610) ung 2015396..2016109 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  KIP84_RS09610 (KIP84_09615) - 2016163..2016759 (-) 597 WP_017386831.1 6-carboxytetrahydropterin synthase -
  KIP84_RS09615 (KIP84_09620) gspK 2016987..2017946 (-) 960 WP_213688359.1 type II secretion system minor pseudopilin GspK -
  KIP84_RS09620 (KIP84_09625) xcpW 2017947..2018702 (-) 756 WP_039761079.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KIP84_RS09625 (KIP84_09630) xcpV 2018702..2019082 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  KIP84_RS09630 (KIP84_09635) - 2019072..2019626 (-) 555 WP_039761075.1 type II secretion system protein -
  KIP84_RS09635 (KIP84_09640) - 2019633..2020241 (-) 609 WP_213689836.1 TetR/AcrR family transcriptional regulator -
  KIP84_RS09640 (KIP84_09645) - 2020278..2021051 (-) 774 WP_005069538.1 TatD family hydrolase -
  KIP84_RS09645 (KIP84_09650) - 2021069..2021410 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  KIP84_RS09650 (KIP84_09655) - 2021421..2022401 (-) 981 WP_039761071.1 DNA polymerase III subunit delta' -
  KIP84_RS09655 (KIP84_09660) kdsB 2022415..2023176 (-) 762 WP_213688360.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=568771 KIP84_RS09625 WP_002121425.1 2018702..2019082(-) (xcpV) [Acinetobacter sp. BHS4]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=568771 KIP84_RS09625 WP_002121425.1 2018702..2019082(-) (xcpV) [Acinetobacter sp. BHS4]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937