Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KIP84_RS02120 Genome accession   NZ_CP075323
Coordinates   446463..447092 (-) Length   209 a.a.
NCBI ID   WP_199113554.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441463..452092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS02085 (KIP84_02085) mlaE 441796..442572 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KIP84_RS02090 (KIP84_02090) - 442572..443252 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KIP84_RS02095 (KIP84_02095) - 443279..443920 (+) 642 WP_002116826.1 ABC transporter substrate-binding protein -
  KIP84_RS02100 (KIP84_02100) - 443932..444219 (+) 288 WP_019767454.1 STAS domain-containing protein -
  KIP84_RS02105 (KIP84_02105) - 444292..445305 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  KIP84_RS02110 (KIP84_02110) - 445464..446045 (+) 582 WP_032004815.1 TIGR00730 family Rossman fold protein -
  KIP84_RS02115 (KIP84_02115) - 446060..446461 (+) 402 WP_017386994.1 NUDIX domain-containing protein -
  KIP84_RS02120 (KIP84_02120) comF 446463..447092 (-) 630 WP_199113554.1 phosphoribosyltransferase family protein Machinery gene
  KIP84_RS02125 (KIP84_02125) recG 447085..449130 (-) 2046 WP_213689244.1 ATP-dependent DNA helicase RecG -
  KIP84_RS02130 (KIP84_02130) - 449151..449966 (+) 816 WP_133482068.1 NAD-dependent epimerase/dehydratase family protein -
  KIP84_RS02135 (KIP84_02135) - 450046..451029 (+) 984 WP_213689245.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24519.70 Da        Isoelectric Point: 9.9656

>NTDB_id=568762 KIP84_RS02120 WP_199113554.1 446463..447092(-) (comF) [Acinetobacter sp. BHS4]
MFNFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=568762 KIP84_RS02120 WP_199113554.1 446463..447092(-) (comF) [Acinetobacter sp. BHS4]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCACTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCTGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACACCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828