Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   KIP84_RS01745 Genome accession   NZ_CP075323
Coordinates   372590..373066 (+) Length   158 a.a.
NCBI ID   WP_213689211.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367590..378066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS01735 (KIP84_01735) - 368054..368836 (+) 783 WP_069124535.1 pilus assembly PilX N-terminal domain-containing protein -
  KIP84_RS01740 (KIP84_01740) - 368851..372576 (+) 3726 WP_213689210.1 PilC/PilY family type IV pilus protein -
  KIP84_RS01745 (KIP84_01745) pilY2 372590..373066 (+) 477 WP_213689211.1 type IV pilin protein Machinery gene
  KIP84_RS01750 (KIP84_01750) - 373060..373524 (+) 465 WP_068563932.1 type IV pilin protein -
  KIP84_RS01755 (KIP84_01755) rpsP 373671..373922 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  KIP84_RS01760 (KIP84_01760) rimM 373942..374490 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  KIP84_RS01765 (KIP84_01765) trmD 374533..375288 (+) 756 WP_213689212.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KIP84_RS01770 (KIP84_01770) rplS 375508..375876 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  KIP84_RS01775 (KIP84_01775) - 375929..376870 (-) 942 WP_213689809.1 triacylglycerol lipase -
  KIP84_RS01780 (KIP84_01780) - 376986..378020 (-) 1035 WP_213689213.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17344.93 Da        Isoelectric Point: 9.7871

>NTDB_id=568761 KIP84_RS01745 WP_213689211.1 372590..373066(+) (pilY2) [Acinetobacter sp. BHS4]
MKSKFTYSFGFTLIELMVVVVIVAIFAAIALPSYQAYVLRADASRAEQKIQQIAMQLARQKSRNFNYRGFSTGATAPVIL
PVGAIGSAIKYQITVRDGDDTTKTLMDTSVLGQNWVIRAEASDPYNFTFLFKSSGLRCKNKAADNVTYTTCGTGGESW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=568761 KIP84_RS01745 WP_213689211.1 372590..373066(+) (pilY2) [Acinetobacter sp. BHS4]
ATGAAAAGTAAATTCACATATTCTTTCGGCTTTACTCTTATTGAGCTAATGGTTGTAGTAGTGATTGTTGCTATTTTTGC
TGCAATTGCATTGCCCTCATATCAAGCATATGTTCTGCGTGCTGATGCTTCGCGTGCAGAACAAAAAATTCAACAAATCG
CCATGCAACTCGCGCGTCAGAAATCTAGAAATTTTAATTATAGAGGTTTTTCTACTGGTGCTACCGCACCAGTAATTTTA
CCTGTTGGAGCGATTGGTAGCGCTATTAAATATCAAATAACGGTAAGAGATGGTGACGATACGACGAAAACTTTAATGGA
TACTTCGGTTTTAGGGCAAAATTGGGTTATTCGGGCAGAGGCTTCCGATCCTTATAATTTTACTTTTTTATTTAAAAGTA
GCGGGTTACGTTGTAAGAATAAAGCTGCTGATAATGTTACTTATACAACTTGTGGTACGGGAGGGGAGTCATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

49.045

99.367

0.487
  comE Acinetobacter baylyi ADP1

43.636

100

0.456