Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KI610_RS14550 Genome accession   NZ_CP075189
Coordinates   3044868..3045641 (+) Length   257 a.a.
NCBI ID   WP_226495681.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 77     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3039868..3050641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI610_RS14525 (KI610_14455) gcvA 3039982..3040950 (-) 969 WP_226495676.1 transcriptional regulator GcvA -
  KI610_RS14530 (KI610_14460) - 3041084..3041308 (+) 225 WP_226495677.1 hypothetical protein -
  KI610_RS14535 (KI610_14465) - 3041517..3043079 (+) 1563 WP_226495678.1 acetyl-CoA hydrolase/transferase family protein -
  KI610_RS14540 (KI610_14470) pgeF 3043135..3043863 (-) 729 WP_226495679.1 peptidoglycan editing factor PgeF -
  KI610_RS14545 (KI610_14475) rluD 3043856..3044815 (-) 960 WP_226495680.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI610_RS14550 (KI610_14480) comL 3044868..3045641 (+) 774 WP_226495681.1 outer membrane protein assembly factor BamD Machinery gene
  KI610_RS14555 (KI610_14485) - 3046302..3048680 (-) 2379 WP_226495682.1 serine/threonine protein kinase -
  KI610_RS14560 (KI610_14490) - 3048677..3049108 (-) 432 WP_226495683.1 DUF3293 domain-containing protein -
  KI610_RS14565 (KI610_14495) rmuC 3049092..3050423 (-) 1332 WP_226495684.1 DNA recombination protein RmuC -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29097.28 Da        Isoelectric Point: 8.3366

>NTDB_id=568531 KI610_RS14550 WP_226495681.1 3044868..3045641(+) (comL) [Ferribacterium limneticum strain 77]
MAVFIAAFIAGCGMMPAQIDETAGWSAGKLYGEAKDAQADNNWDKAAKMLEKLEARFPYGRYAQQAQLEMGYVYWKNNEP
GSALAACDRFIKLHPSHPAVDYVYYLKGLVNFNEDLGLTALVSSQDPTERDPKAAREAFEAFKELVTRFPNSKYTPDATL
RMNYLINALASLEVHVARYYVKRGAYIAAANRAQYAIKTYPQAPAIEEAMFIMVTAYDKMGMNDLRDDADRVMKKNFPKS
PFYKDGLKSKTAWWQLW

Nucleotide


Download         Length: 774 bp        

>NTDB_id=568531 KI610_RS14550 WP_226495681.1 3044868..3045641(+) (comL) [Ferribacterium limneticum strain 77]
ATGGCTGTTTTCATTGCCGCTTTCATCGCTGGCTGCGGCATGATGCCGGCGCAAATCGACGAAACCGCCGGCTGGTCGGC
AGGCAAGCTCTATGGCGAAGCCAAGGATGCGCAAGCCGACAACAACTGGGACAAGGCCGCCAAGATGCTGGAGAAGCTGG
AGGCCCGCTTCCCCTATGGCCGCTACGCCCAGCAAGCCCAGCTTGAAATGGGTTACGTGTACTGGAAAAACAACGAACCC
GGTTCGGCCCTGGCCGCCTGTGACCGCTTCATCAAGCTGCACCCGAGCCACCCGGCCGTCGATTACGTCTATTACCTGAA
GGGCTTGGTCAACTTCAACGAAGACCTCGGCCTGACCGCTCTGGTCAGCTCCCAGGACCCGACCGAACGCGACCCCAAAG
CCGCCCGCGAAGCCTTCGAGGCCTTCAAGGAATTGGTCACCCGCTTCCCGAACAGCAAATACACGCCCGACGCCACGTTG
CGCATGAACTACCTGATCAATGCGCTGGCCTCGCTGGAAGTCCACGTCGCCCGCTACTACGTCAAGCGCGGCGCCTATAT
TGCCGCAGCCAATCGCGCCCAGTACGCGATCAAGACCTATCCGCAGGCCCCGGCCATCGAAGAGGCTATGTTCATCATGG
TTACCGCTTACGACAAGATGGGCATGAACGATCTGCGCGACGACGCTGATCGCGTGATGAAGAAGAATTTCCCGAAGAGC
CCGTTTTACAAAGACGGGTTGAAGAGCAAGACGGCTTGGTGGCAGCTCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(28-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.042

100

0.498
  comL Neisseria gonorrhoeae MS11

49.407

98.444

0.486