Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   KI611_RS20715 Genome accession   NZ_CP075185
Coordinates   4358404..4358778 (-) Length   124 a.a.
NCBI ID   WP_226417538.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 110     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4353404..4363778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI611_RS20700 (KI611_20655) - 4355305..4357464 (-) 2160 WP_226417535.1 methyl-accepting chemotaxis protein -
  KI611_RS20705 (KI611_20660) - 4357505..4358017 (-) 513 WP_226417536.1 chemotaxis protein CheW -
  KI611_RS20710 (KI611_20665) - 4358023..4358388 (-) 366 WP_226417537.1 response regulator transcription factor -
  KI611_RS20715 (KI611_20670) pilG 4358404..4358778 (-) 375 WP_226417538.1 response regulator Regulator
  KI611_RS20720 (KI611_20675) thiD 4359005..4359874 (+) 870 WP_226417539.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KI611_RS20725 (KI611_20680) thiE 4359864..4360496 (+) 633 WP_226417540.1 thiamine phosphate synthase -
  KI611_RS20730 (KI611_20685) hemL 4360493..4361776 (+) 1284 WP_226417541.1 glutamate-1-semialdehyde 2,1-aminomutase -
  KI611_RS20735 (KI611_20690) sugE 4361773..4362111 (+) 339 WP_226417542.1 quaternary ammonium compound efflux SMR transporter SugE -
  KI611_RS20740 (KI611_20695) mgtE 4362103..4363545 (-) 1443 WP_226417543.1 magnesium transporter -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13757.87 Da        Isoelectric Point: 5.8334

>NTDB_id=568447 KI611_RS20715 WP_226417538.1 4358404..4358778(-) (pilG) [Dechloromonas denitrificans strain 110]
MVIDDSNTIRRSAEIFLVQAGCQVVLAEDGFDALAKIADHQPSVIFCDIMMPRLDGYQTCSLIKKNPRFKATPVIMLSSK
DGLFDRARGRMVGSDQYLTKPFTKDSLLQTVATFALPSEPETNQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=568447 KI611_RS20715 WP_226417538.1 4358404..4358778(-) (pilG) [Dechloromonas denitrificans strain 110]
ATGGTCATTGACGACAGCAACACGATACGGCGAAGCGCCGAGATATTTCTCGTGCAGGCCGGCTGCCAGGTTGTGCTGGC
CGAAGACGGTTTCGATGCCCTGGCCAAGATCGCCGATCACCAGCCGAGCGTGATCTTCTGCGACATCATGATGCCGCGCC
TCGACGGCTACCAAACCTGTTCGTTGATCAAGAAAAACCCCCGTTTCAAAGCCACACCGGTGATCATGCTGTCCTCCAAG
GATGGCCTGTTTGACCGGGCGCGCGGGCGGATGGTCGGGTCGGACCAGTATCTGACCAAGCCTTTTACCAAAGACAGCCT
GCTGCAAACGGTCGCGACCTTTGCCTTGCCGTCAGAACCAGAAACCAACCAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

65.766

89.516

0.589
  pilH Synechocystis sp. PCC 6803

40.541

89.516

0.363