Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   MK616_RS18130 Genome accession   NZ_CP092778
Coordinates   3689342..3689461 (+) Length   39 a.a.
NCBI ID   WP_021494790.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684342..3694461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS18110 (MK616_18110) narK 3684502..3685692 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  MK616_RS18115 (MK616_18115) argS 3685826..3687496 (-) 1671 WP_007407633.1 arginine--tRNA ligase -
  MK616_RS18120 (MK616_18120) - 3687493..3687921 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  MK616_RS18125 (MK616_18125) rapF 3688213..3689358 (+) 1146 WP_099721980.1 tetratricopeptide repeat protein Regulator
  MK616_RS18130 (MK616_18130) phrF 3689342..3689461 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  MK616_RS18135 (MK616_18135) - 3689659..3689862 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  MK616_RS18140 (MK616_18140) - 3689876..3690079 (+) 204 WP_007407641.1 hypothetical protein -
  MK616_RS18145 (MK616_18145) - 3690114..3690299 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  MK616_RS18150 (MK616_18150) - 3690486..3690767 (+) 282 WP_007407643.1 hypothetical protein -
  MK616_RS18155 (MK616_18155) - 3690811..3691323 (+) 513 WP_007614439.1 stage II sporulation protein M -
  MK616_RS18160 (MK616_18160) - 3691914..3692132 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  MK616_RS18165 (MK616_18165) speB 3692287..3693159 (-) 873 WP_007614448.1 agmatinase -
  MK616_RS18170 (MK616_18170) speE 3693218..3694048 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=568308 MK616_RS18130 WP_021494790.1 3689342..3689461(+) (phrF) [Bacillus amyloliquefaciens strain WF2020]
MKLKYKLALTCLAIGTIFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=568308 MK616_RS18130 WP_021494790.1 3689342..3689461(+) (phrF) [Bacillus amyloliquefaciens strain WF2020]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTAGCGATAGGCACTATTTTTGTTTCAGCCGACATTGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  phrF Bacillus subtilis subsp. subtilis str. 168

66.667

69.231

0.462