Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   AVFI_RS11445 Genome accession   NZ_CP092712
Coordinates   2498419..2499024 (+) Length   201 a.a.
NCBI ID   WP_011262617.1    Uniprot ID   Q5E2S4
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2493419..2504024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS11425 (AVFI_11425) - 2494003..2495658 (-) 1656 WP_054776182.1 SulP family inorganic anion transporter -
  AVFI_RS11430 (AVFI_11430) can 2495951..2496607 (+) 657 WP_012533718.1 carbonate dehydratase -
  AVFI_RS11435 (AVFI_11435) - 2496728..2496979 (-) 252 WP_005420873.1 hypothetical protein -
  AVFI_RS11440 (AVFI_11440) hpt 2497514..2498044 (-) 531 WP_054776181.1 hypoxanthine phosphoribosyltransferase -
  AVFI_RS11445 (AVFI_11445) hapR 2498419..2499024 (+) 606 WP_011262617.1 TetR/AcrR family transcriptional regulator Regulator
  AVFI_RS11455 (AVFI_11455) lpdA 2500375..2501802 (-) 1428 WP_005420880.1 dihydrolipoyl dehydrogenase -
  AVFI_RS11460 (AVFI_11460) aceF 2502078..2503964 (-) 1887 WP_155663041.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23245.24 Da        Isoelectric Point: 4.8215

>NTDB_id=567970 AVFI_RS11445 WP_011262617.1 2498419..2499024(+) (hapR) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MDTIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNKVENEFHQFIN
NSISLDLDVRSNLNTLLLNIIDSVQTGNKWIKVWFEWSTSTRDEVWPLFLSTHSNTNQVIKTMFEEGIERNEVCNDHTPE
NLTKMLHGICYSVFIQANRNSSSEEMEETANCFLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=567970 AVFI_RS11445 WP_011262617.1 2498419..2499024(+) (hapR) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGGATACAATCCAAAAAAGGCCTAGAACAAGGCTATCTCCAGAAAAGCGCAAAGAACAATTACTTGATATCGCAATTGA
AGTATTTTCACAACGTGGCATCGGTCGCGGTGGTCATGCTGATATTGCAGAAATCGCTCAGGTCTCTGTCGCTACCGTGT
TTAATTACTTCCCAACAAGAGAAGATCTTGTTGATGATGTATTAAATAAAGTTGAAAACGAATTTCACCAATTCATCAAT
AATTCAATTTCTCTTGATCTTGATGTTCGTTCTAACCTTAATACTCTTCTTCTGAATATCATTGACAGTGTTCAAACTGG
TAATAAGTGGATCAAAGTATGGTTTGAATGGAGTACCTCTACTCGTGATGAAGTATGGCCTCTTTTCTTAAGTACTCACT
CAAATACAAATCAAGTTATCAAAACTATGTTTGAAGAAGGTATTGAACGTAACGAAGTATGTAACGATCATACCCCTGAA
AACCTAACAAAAATGCTTCATGGTATTTGTTACTCTGTTTTCATTCAGGCTAACCGTAATAGTTCATCTGAAGAAATGGA
AGAAACAGCAAATTGCTTCTTGAATATGTTGTGTATTTATAAATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E2S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

59.799

99.005

0.592
  hapR Vibrio cholerae strain A1552

59.799

99.005

0.592
  opaR Vibrio parahaemolyticus RIMD 2210633

59.5

99.502

0.592