Detailed information
Bioinformatically predicted
Overview
| Name | letA | Type | Regulator |
| Locus tag | AVFI_RS08630 | Genome accession | NZ_CP092712 |
| Coordinates | 1872080..1872724 (-) | Length | 214 a.a. |
| NCBI ID | WP_005419913.1 | Uniprot ID | Q5E4C4 |
| Organism | Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507 | ||
| Function | regulate competence development (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1867080..1877724
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVFI_RS08585 (AVFI_08585) | - | 1867891..1868388 (+) | 498 | WP_017019977.1 | glycine cleavage system protein R | - |
| AVFI_RS08620 (AVFI_08620) | pgsA | 1869654..1870208 (-) | 555 | WP_005419911.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| AVFI_RS08625 (AVFI_08625) | uvrC | 1870254..1872080 (-) | 1827 | WP_038155320.1 | excinuclease ABC subunit UvrC | Machinery gene |
| AVFI_RS08630 (AVFI_08630) | letA | 1872080..1872724 (-) | 645 | WP_005419913.1 | UvrY/SirA/GacA family response regulator transcription factor | Regulator |
| AVFI_RS08635 (AVFI_08635) | - | 1872902..1875271 (-) | 2370 | WP_188863962.1 | DNA polymerase II | - |
| AVFI_RS08640 (AVFI_08640) | - | 1875276..1876052 (-) | 777 | WP_005419915.1 | nucleotidyltransferase | - |
| AVFI_RS08645 (AVFI_08645) | - | 1876150..1877472 (-) | 1323 | WP_199414946.1 | IS4 family transposase | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 23914.68 Da Isoelectric Point: 5.3771
>NTDB_id=567962 AVFI_RS08630 WP_005419913.1 1872080..1872724(-) (letA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MIKVFLVDDHELVRTGIRRILEDVRGIKVVGEADSGEDAVKWCRTEQADIVLMDMNMPGIGGLEATKKILRFNPDVKVIV
LTIHTENPFPTKVMQAGAAGYLTKGAGPDEMVNAIRMVQSGQRYLSPEIAQQMALSQFTPDAENPFKELSERELQIMMMI
TKGEKVTDISEQLNLSPKTVNSYRYRLFSKLNISGDVELTHLAIRHGILDAETL
MIKVFLVDDHELVRTGIRRILEDVRGIKVVGEADSGEDAVKWCRTEQADIVLMDMNMPGIGGLEATKKILRFNPDVKVIV
LTIHTENPFPTKVMQAGAAGYLTKGAGPDEMVNAIRMVQSGQRYLSPEIAQQMALSQFTPDAENPFKELSERELQIMMMI
TKGEKVTDISEQLNLSPKTVNSYRYRLFSKLNISGDVELTHLAIRHGILDAETL
Nucleotide
Download Length: 645 bp
>NTDB_id=567962 AVFI_RS08630 WP_005419913.1 1872080..1872724(-) (letA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
GTGATTAAAGTATTCCTTGTAGATGATCATGAGCTGGTTCGCACAGGGATTAGACGTATTCTTGAAGACGTCCGTGGAAT
TAAAGTAGTAGGGGAAGCTGACAGCGGTGAAGATGCCGTTAAATGGTGTCGAACAGAGCAGGCAGATATTGTTCTTATGG
ATATGAACATGCCTGGCATTGGTGGCTTAGAAGCAACCAAAAAGATTTTAAGATTTAACCCAGATGTGAAAGTTATAGTT
TTGACTATTCATACTGAAAACCCATTTCCGACTAAAGTTATGCAAGCCGGTGCTGCTGGTTATTTAACTAAGGGTGCAGG
TCCTGATGAAATGGTTAATGCGATTCGTATGGTACAAAGTGGCCAACGCTACTTATCGCCTGAAATTGCACAACAGATGG
CGTTAAGTCAATTTACGCCCGACGCGGAGAATCCATTTAAAGAACTTTCTGAACGAGAGTTACAAATAATGATGATGATC
ACCAAAGGCGAAAAAGTGACGGATATTTCCGAACAACTGAATTTAAGTCCTAAAACAGTGAACAGCTATCGTTATCGCTT
ATTCAGTAAGTTAAATATAAGTGGAGATGTTGAATTAACTCATCTAGCTATTCGTCATGGTATTTTAGATGCTGAGACGC
TGTAG
GTGATTAAAGTATTCCTTGTAGATGATCATGAGCTGGTTCGCACAGGGATTAGACGTATTCTTGAAGACGTCCGTGGAAT
TAAAGTAGTAGGGGAAGCTGACAGCGGTGAAGATGCCGTTAAATGGTGTCGAACAGAGCAGGCAGATATTGTTCTTATGG
ATATGAACATGCCTGGCATTGGTGGCTTAGAAGCAACCAAAAAGATTTTAAGATTTAACCCAGATGTGAAAGTTATAGTT
TTGACTATTCATACTGAAAACCCATTTCCGACTAAAGTTATGCAAGCCGGTGCTGCTGGTTATTTAACTAAGGGTGCAGG
TCCTGATGAAATGGTTAATGCGATTCGTATGGTACAAAGTGGCCAACGCTACTTATCGCCTGAAATTGCACAACAGATGG
CGTTAAGTCAATTTACGCCCGACGCGGAGAATCCATTTAAAGAACTTTCTGAACGAGAGTTACAAATAATGATGATGATC
ACCAAAGGCGAAAAAGTGACGGATATTTCCGAACAACTGAATTTAAGTCCTAAAACAGTGAACAGCTATCGTTATCGCTT
ATTCAGTAAGTTAAATATAAGTGGAGATGTTGAATTAACTCATCTAGCTATTCGTCATGGTATTTTAGATGCTGAGACGC
TGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| letA | Legionella pneumophila str. Paris |
53.333 |
98.131 |
0.523 |
| letA | Legionella pneumophila strain ERS1305867 |
53.333 |
98.131 |
0.523 |