Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AVFI_RS00645 Genome accession   NZ_CP092712
Coordinates   152654..153289 (-) Length   211 a.a.
NCBI ID   WP_236782058.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147654..158289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS00630 (AVFI_00630) ompR 147654..148373 (+) 720 WP_012532766.1 two-component system response regulator OmpR -
  AVFI_RS00635 (AVFI_00635) envZ 148710..150014 (+) 1305 WP_065604246.1 two-component system sensor histidine kinase EnvZ -
  AVFI_RS00640 (AVFI_00640) - 150508..151899 (-) 1392 WP_054775422.1 uracil-xanthine permease family protein -
  AVFI_RS00645 (AVFI_00645) comF 152654..153289 (-) 636 WP_236782058.1 ComF family protein Machinery gene
  AVFI_RS00650 (AVFI_00650) bioH 153402..154175 (+) 774 WP_011260983.1 pimeloyl-ACP methyl ester esterase BioH -
  AVFI_RS00655 (AVFI_00655) - 154202..154681 (+) 480 WP_005417025.1 hypothetical protein -
  AVFI_RS00660 (AVFI_00660) - 155095..157410 (-) 2316 WP_188863308.1 Tex family protein -
  AVFI_RS00665 (AVFI_00665) greB 157821..158288 (-) 468 WP_005417033.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24446.36 Da        Isoelectric Point: 8.9633

>NTDB_id=567923 AVFI_RS00645 WP_236782058.1 152654..153289(-) (comF) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MPPSETIWCQACLDLIKTVPRCQRCGLQTEHETDVCGECLLHPPQWDRLYCVSDYSDPLREYINKLKYAQQFWLAQDLGV
LLSKRIPEPAPLILPVPLHWKRFWWRSYNQSDHLGWTLEREFNLKSSTTHCNNKILKRVKATRPQQGLSRSFRQTNLLGA
FKITKPIKEKHVALVDDVVTTGATINLLCVELRKAGVERIDVYTVCRTGRS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=567923 AVFI_RS00645 WP_236782058.1 152654..153289(-) (comF) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGCCACCATCTGAAACCATTTGGTGCCAAGCTTGCTTAGATTTAATCAAAACAGTGCCTCGCTGTCAGCGATGTGGTTT
GCAAACCGAGCATGAGACTGATGTCTGCGGAGAGTGCCTTTTGCACCCACCACAATGGGACCGCTTATATTGTGTGAGTG
ACTATTCTGACCCATTACGCGAGTACATTAATAAACTCAAATACGCTCAACAGTTCTGGCTTGCCCAAGATTTAGGTGTA
TTACTCAGTAAGCGAATCCCAGAACCAGCGCCTCTCATTCTTCCTGTTCCTCTGCATTGGAAACGATTCTGGTGGCGTTC
TTATAATCAAAGTGATCATTTAGGTTGGACATTAGAAAGAGAATTCAATCTTAAGTCGTCCACCACTCACTGTAATAACA
AGATATTGAAACGCGTTAAAGCGACAAGGCCTCAACAAGGTTTATCTCGCTCGTTTAGACAAACCAATTTACTCGGTGCA
TTTAAAATCACTAAACCAATCAAAGAAAAACACGTTGCTCTTGTTGATGATGTGGTGACAACGGGTGCAACGATTAATCT
GTTGTGTGTGGAGTTAAGAAAAGCGGGGGTTGAACGTATTGATGTGTATACGGTTTGTCGGACGGGGCGGAGTTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(162-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

47

94.787

0.445
  comF Vibrio campbellii strain DS40M4

41.905

99.526

0.417
  comF Haemophilus influenzae Rd KW20

38.785

100

0.393
  comF Haemophilus influenzae 86-028NP

38.318

100

0.389