Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   MKR81_RS06250 Genome accession   NZ_CP092682
Coordinates   1343256..1343900 (+) Length   214 a.a.
NCBI ID   WP_005434947.1    Uniprot ID   A0ABQ5Y0T2
Organism   Vibrio campbellii strain IFL1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338256..1348900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS06230 (MKR81_06230) - 1338576..1338896 (-) 321 WP_005431208.1 HI1450 family dsDNA-mimic protein -
  MKR81_RS06235 (MKR81_06235) yeiP 1338899..1339465 (-) 567 WP_005431209.1 elongation factor P-like protein YeiP -
  MKR81_RS06240 (MKR81_06240) - 1339653..1340420 (+) 768 WP_240305273.1 nucleotidyltransferase domain-containing protein -
  MKR81_RS06245 (MKR81_06245) - 1340460..1342823 (-) 2364 WP_240305274.1 DNA polymerase II -
  MKR81_RS06250 (MKR81_06250) letA 1343256..1343900 (+) 645 WP_005434947.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  MKR81_RS06255 (MKR81_06255) uvrC 1343902..1345734 (+) 1833 WP_103410795.1 excinuclease ABC subunit UvrC -
  MKR81_RS06260 (MKR81_06260) pgsA 1345781..1346338 (+) 558 WP_005530466.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23797.38 Da        Isoelectric Point: 5.6546

>NTDB_id=567787 MKR81_RS06250 WP_005434947.1 1343256..1343900(+) (letA) [Vibrio campbellii strain IFL1]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEEAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMMMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=567787 MKR81_RS06250 WP_005434947.1 1343256..1343900(+) (letA) [Vibrio campbellii strain IFL1]
TTGATAAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGTCGCAGTAATCATGCAGACGTCGTTTTAATGG
ATATGAACATGCCAGGAATTGGCGGCTTGGAAGCCACTAAAAAGATTCTTCGCGTGAATCCTGATGTAAAAATCATCGTA
TTAACCGTTCATACGGAAAATCCGTTCCCAACTAAAGTGATGCAGGCGGGTGCTTCTGGTTACCTAACCAAAGGTGCAGG
CCCTGATGAAATGGTTAACGCAATTCGTGTGGTTAACAGTGGGCAGCGTTACATCTCGCCAGAGATTGCGCAGCAGATGG
CATTGAGTCAATTCTCACCTGCCTCAGAAAACCCATTTAAAGACCTTTCTGAACGCGAACTGCAGATCATGATGATGATC
ACTAAAGGGCAGAAAGTAACGGATATTTCTGAACAACTGAATTTAAGTCCAAAAACAGTCAACAGCTACCGCTACCGTCT
GTTTAGCAAATTGGACATCAATGGTGACGTTGAGTTAACACACTTAGCGATCCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.476

98.131

0.495
  letA Legionella pneumophila strain ERS1305867

50.476

98.131

0.495