Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MJ614_RS07920 Genome accession   NZ_CP092647
Coordinates   1201059..1201796 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC5502     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196059..1206796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ614_RS07905 clpC 1196513..1199086 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  MJ614_RS07910 yfiH 1199216..1199947 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  MJ614_RS07915 rluD 1199944..1200924 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MJ614_RS07920 comL 1201059..1201796 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MJ614_RS07925 raiA 1202067..1202408 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MJ614_RS07930 pheL 1202512..1202559 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MJ614_RS07935 pheA 1202658..1203818 (+) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  MJ614_RS07940 tyrA 1203861..1204982 (-) 1122 WP_000225217.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MJ614_RS07945 aroF 1204993..1206063 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MJ614_RS07950 yfiL 1206273..1206666 (+) 394 Protein_1182 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=567680 MJ614_RS07920 WP_000197686.1 1201059..1201796(+) (comL) [Escherichia coli strain EC5502]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=567680 MJ614_RS07920 WP_000197686.1 1201059..1201796(+) (comL) [Escherichia coli strain EC5502]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376