Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   MID12_RS12235 Genome accession   NZ_CP092644
Coordinates   3230886..3232295 (+) Length   469 a.a.
NCBI ID   WP_040249885.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3225886..3237295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS12220 - 3226460..3227449 (-) 990 WP_052482283.1 Ppx/GppA phosphatase family protein -
  MID12_RS12225 - 3227650..3228552 (+) 903 WP_263173098.1 hypothetical protein -
  MID12_RS12230 - 3228828..3230663 (-) 1836 WP_263166911.1 BACON domain-containing protein -
  MID12_RS12235 radA/sms 3230886..3232295 (+) 1410 WP_040249885.1 DNA repair protein RadA Machinery gene
  MID12_RS12240 disA 3232363..3233487 (+) 1125 WP_040249887.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  MID12_RS12245 - 3233738..3234190 (+) 453 WP_263166915.1 hypothetical protein -
  MID12_RS12250 - 3234340..3235014 (+) 675 WP_263166918.1 hypothetical protein -
  MID12_RS12255 - 3235132..3236940 (-) 1809 WP_040249889.1 glycoside hydrolase family 15 protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49503.64 Da        Isoelectric Point: 8.2557

>NTDB_id=567632 MID12_RS12235 WP_040249885.1 3230886..3232295(+) (radA/sms) [Streptomyces sp. SCSIO ZS0520]
MATRTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASGEHRTLYVTGEESASQVRLRADRIKALDDDLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKIPAGMKVTEVADMGDALRVLPRSRRREAPQEGAERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=567632 MID12_RS12235 WP_040249885.1 3230886..3232295(+) (radA/sms) [Streptomyces sp. SCSIO ZS0520]
ATGGCCACCCGTACGAAGACCGCCAAGGACCGCCCGTCCTACCGCTGTACCGAGTGCGGCTGGCAGACCGCGAAGTGGCT
CGGACGCTGCCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGTACGGCGCCCCCGCCGTGCGCACCACCGCGCCCGGCC
GGGTCACCTCCTCCGCGCTGCCGATCGGGCAGGTCGACGGGCGGCAGGCCACCGCGCGCAGCACCGGGGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTACCAGGGGCGGTGGTGCTCCTCGCGGGCGAGCCCGGGGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCCGCGAAGGCGGCCAGCGGCGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCCGCGAGCCAGG
TGCGGCTGCGCGCCGACCGGATCAAGGCGCTGGACGACGACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCCGTCCTC
GGCCATCTCGACGCGGTCAAGCCCTCGCTGCTCGTCCTCGACTCGGTGCAGACCGTGGCCTCCCCGGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTGC
TCGTCGGCCATGTCACCAAGGACGGCGCCATCGCCGGGCCCCGCCTCCTGGAGCACCTGGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGGCTGCGCCTGGTCCGCGGCGTCAAGAACCGGTACGGCACCACCGACGAGGTGGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTCACGCGGCGGGCCGAGGCCGTGCCGG
GCACCTGCCTGACGGTCACCCTGGAGGGGCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTGGACTCGCAGATC
CCCTCCCCGCGCCGGACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACCGTCGGCGGCGTGAAGCTCTCCGAACCGGCCGCCGACCTGG
CCATCGCCCTGGCCCTGGCGAGCGCGGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCCATCGGGGAGGTGGGCCTG
GCGGGCGAGGTGCGGCGGGTCACCGGGGTGCAGCGCAGACTGGCCGAGGCGCACCGGCTCGGCTTCACGCACGCCCTCGT
ACCGGCCGATCCCGGGAAGATCCCGGCGGGCATGAAGGTGACGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTTC
CCCGTTCACGTCGGCGAGAGGCCCCGCAGGAGGGGGCGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.588

0.424
  radA Streptococcus pneumoniae Rx1

42.222

95.949

0.405
  radA Streptococcus pneumoniae D39

42.222

95.949

0.405
  radA Streptococcus pneumoniae R6

42.222

95.949

0.405
  radA Streptococcus pneumoniae TIGR4

42.222

95.949

0.405
  radA Streptococcus mitis SK321

43.662

90.832

0.397
  radA Streptococcus mitis NCTC 12261

43.662

90.832

0.397