Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KH277_RS02915 Genome accession   NZ_CP075054
Coordinates   572040..573425 (+) Length   461 a.a.
NCBI ID   WP_043867470.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 567040..578425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH277_RS02895 (KH277_02895) - 568187..568834 (-) 648 WP_003151384.1 YigZ family protein -
  KH277_RS02900 (KH277_02900) degS 569057..570220 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  KH277_RS02905 (KH277_02905) degU 570297..570986 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KH277_RS02910 (KH277_02910) - 571084..571932 (+) 849 WP_043867471.1 DegV family protein -
  KH277_RS02915 (KH277_02915) comFA 572040..573425 (+) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  KH277_RS02920 (KH277_02920) - 573483..573767 (+) 285 WP_003151389.1 competence protein ComFB -
  KH277_RS02925 (KH277_02925) comFC 573773..574462 (+) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  KH277_RS02930 (KH277_02930) - 574536..574955 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  KH277_RS02935 (KH277_02935) flgM 575025..575291 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KH277_RS02940 (KH277_02940) - 575306..575788 (+) 483 WP_003151394.1 flagellar protein FlgN -
  KH277_RS02945 (KH277_02945) flgK 575804..577321 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  KH277_RS02950 (KH277_02950) flgL 577333..578250 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.09 Da        Isoelectric Point: 10.0979

>NTDB_id=567449 KH277_RS02915 WP_043867470.1 572040..573425(+) (comFA) [Bacillus velezensis strain VTX20]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQELQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=567449 KH277_RS02915 WP_043867470.1 572040..573425(+) (comFA) [Bacillus velezensis strain VTX20]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAGAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(326-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631