Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KIV12_RS13940 Genome accession   NZ_CP075052
Coordinates   2739075..2739977 (-) Length   300 a.a.
NCBI ID   WP_035700738.1    Uniprot ID   A0A1K1TX41
Organism   Bacillus altitudinis strain LZP 02     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2734075..2744977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS13925 (KIV12_13925) xerC 2734450..2735367 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  KIV12_RS13930 (KIV12_13930) trmFO 2735430..2736734 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KIV12_RS13935 (KIV12_13935) topA 2736805..2738880 (-) 2076 WP_008344821.1 type I DNA topoisomerase -
  KIV12_RS13940 (KIV12_13940) dprA 2739075..2739977 (-) 903 WP_035700738.1 DNA-processing protein DprA Machinery gene
  KIV12_RS13945 (KIV12_13945) sucD 2740041..2740943 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  KIV12_RS13950 (KIV12_13950) sucC 2740966..2742126 (-) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  KIV12_RS13955 (KIV12_13955) - 2742303..2742578 (-) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  KIV12_RS13960 (KIV12_13960) - 2742575..2744308 (-) 1734 WP_217967209.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34045.38 Da        Isoelectric Point: 8.2776

>NTDB_id=567417 KIV12_RS13940 WP_035700738.1 2739075..2739977(-) (dprA) [Bacillus altitudinis strain LZP 02]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
VPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=567417 KIV12_RS13940 WP_035700738.1 2739075..2739977(-) (dprA) [Bacillus altitudinis strain LZP 02]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
GTTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACAGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1K1TX41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38