Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MKS87_RS13395 Genome accession   NZ_CP092631
Coordinates   2574383..2574718 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0ABU0V3E1
Organism   Bacillus subtilis strain YB-15     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2569383..2579718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS13375 (MKS87_13375) gcvT 2569975..2571063 (-) 1089 WP_173614183.1 glycine cleavage system aminomethyltransferase GcvT -
  MKS87_RS13380 (MKS87_13380) yqhH 2571505..2573178 (+) 1674 WP_173614184.1 SNF2-related protein -
  MKS87_RS13385 (MKS87_13385) yqhG 2573199..2573993 (+) 795 WP_003230200.1 YqhG family protein -
  MKS87_RS13390 (MKS87_13390) sinI 2574176..2574349 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MKS87_RS13395 (MKS87_13395) sinR 2574383..2574718 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MKS87_RS13400 (MKS87_13400) tasA 2574811..2575596 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  MKS87_RS13405 (MKS87_13405) sipW 2575660..2576232 (-) 573 WP_003246088.1 signal peptidase I -
  MKS87_RS13410 (MKS87_13410) tapA 2576216..2576977 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  MKS87_RS13415 (MKS87_13415) yqzG 2577249..2577575 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MKS87_RS13420 (MKS87_13420) spoIIT 2577617..2577796 (-) 180 WP_029726723.1 YqzE family protein -
  MKS87_RS13425 (MKS87_13425) comGG 2577868..2578242 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  MKS87_RS13430 (MKS87_13430) comGF 2578243..2578626 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  MKS87_RS13435 (MKS87_13435) comGE 2578652..2578999 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  MKS87_RS13440 (MKS87_13440) comGD 2578983..2579414 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  MKS87_RS13445 (MKS87_13445) comGC 2579404..2579700 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=567370 MKS87_RS13395 WP_003226345.1 2574383..2574718(+) (sinR) [Bacillus subtilis strain YB-15]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=567370 MKS87_RS13395 WP_003226345.1 2574383..2574718(+) (sinR) [Bacillus subtilis strain YB-15]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1