Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AZKH_RS19670 Genome accession   NC_020516
Coordinates   4402009..4402503 (-) Length   164 a.a.
NCBI ID   WP_015437553.1    Uniprot ID   H0PUH7
Organism   Azoarcus sp. KH32C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4397009..4407503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZKH_RS19650 (AZKH_3963) - 4397275..4397829 (-) 555 WP_015437549.1 chemotaxis protein CheW -
  AZKH_RS19655 (AZKH_3964) - 4397842..4399113 (-) 1272 WP_015437550.1 methyl-accepting chemotaxis protein -
  AZKH_RS19660 (AZKH_3965) - 4399147..4401375 (-) 2229 WP_051071793.1 chemotaxis protein CheA -
  AZKH_RS19665 (AZKH_3966) - 4401423..4401758 (-) 336 WP_015437552.1 lipid asymmetry maintenance protein MlaB -
  AZKH_RS19670 (AZKH_3967) ssb 4402009..4402503 (-) 495 WP_015437553.1 single-stranded DNA-binding protein Machinery gene
  AZKH_RS19675 (AZKH_3968) - 4402531..4403715 (-) 1185 WP_015437554.1 MFS transporter -
  AZKH_RS19680 (AZKH_3969) uvrA 4403851..4406685 (+) 2835 WP_015437555.1 excinuclease ABC subunit UvrA -
  AZKH_RS19685 (AZKH_3970) - 4406809..4407108 (+) 300 WP_015437556.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17951.91 Da        Isoelectric Point: 5.9576

>NTDB_id=56726 AZKH_RS19670 WP_015437553.1 4402009..4402503(-) (ssb) [Azoarcus sp. KH32C]
MASLNKVILIGNLGRDPETRYAPSGDAICNVTIATTETWKDKASGERKEATEWHRVVFFGRLAEIASQYLRKGSQVYVEG
RLQTRKWQDKDGQDRYTTEIRADEMKMLGSRSGGDAPMRQSEGGYDAPAPAPARQAPQAAPAQRAPSQPSSGGGFGDFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=56726 AZKH_RS19670 WP_015437553.1 4402009..4402503(-) (ssb) [Azoarcus sp. KH32C]
ATGGCTTCCCTGAACAAAGTGATCCTGATCGGCAACCTGGGTCGGGACCCGGAAACGCGTTATGCGCCGAGCGGTGACGC
GATCTGCAACGTGACGATCGCGACGACCGAGACCTGGAAGGACAAGGCGAGCGGCGAGCGCAAGGAAGCAACGGAGTGGC
ATCGCGTGGTGTTTTTCGGCCGCCTCGCGGAGATCGCGTCGCAATATCTGCGCAAGGGCAGCCAGGTGTACGTGGAAGGC
CGCCTGCAGACGCGCAAGTGGCAGGACAAGGACGGCCAGGATCGTTACACGACGGAAATCCGTGCCGACGAGATGAAGAT
GCTGGGTTCGCGTTCGGGCGGCGATGCGCCGATGCGCCAGTCAGAGGGCGGCTATGACGCGCCGGCCCCGGCTCCGGCAC
GTCAAGCTCCGCAGGCCGCGCCCGCGCAGCGCGCGCCGAGCCAGCCGAGCAGCGGCGGCGGTTTCGGCGACTTCGACGAC
GATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H0PUH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55

100

0.604
  ssb Glaesserella parasuis strain SC1401

51.648

100

0.573
  ssb Neisseria gonorrhoeae MS11

52.874

100

0.561
  ssb Neisseria meningitidis MC58

50

100

0.537

Multiple sequence alignment