Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM03_RS09820 Genome accession   NZ_CP074936
Coordinates   2011737..2012366 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 06_3288     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2006737..2017366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM03_RS09800 (KIM03_09690) ycbZ 2007139..2008899 (-) 1761 WP_032344991.1 AAA family ATPase -
  KIM03_RS09805 (KIM03_09695) matP 2009085..2009537 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM03_RS09810 (KIM03_09700) ompA 2009612..2010652 (-) 1041 WP_000750416.1 porin OmpA -
  KIM03_RS09815 (KIM03_09705) sulA 2011009..2011518 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM03_RS09820 (KIM03_09710) sxy/tfoX 2011737..2012366 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM03_RS09825 (KIM03_09715) yccS 2012329..2014491 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM03_RS09830 (KIM03_09720) yccF 2014501..2014947 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM03_RS09835 (KIM03_09725) helD 2015070..2017124 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566948 KIM03_RS09820 WP_000839153.1 2011737..2012366(+) (sxy/tfoX) [Escherichia coli strain 06_3288]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566948 KIM03_RS09820 WP_000839153.1 2011737..2012366(+) (sxy/tfoX) [Escherichia coli strain 06_3288]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1