Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SAFDA_RS01650 Genome accession   NZ_AP014942
Coordinates   368129..368974 (+) Length   281 a.a.
NCBI ID   WP_001566903.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 363129..373974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS01635 (SAFDA_0316) - 363395..365236 (-) 1842 WP_000077317.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  SAFDA_RS01640 (SAFDA_0317) metC 365205..366365 (-) 1161 WP_000175852.1 cystathionine beta-lyase MetC -
  SAFDA_RS01645 (SAFDA_0318) - 366362..367465 (-) 1104 WP_042727584.1 PLP-dependent transferase -
  SAFDA_RS01650 (SAFDA_0319) spo0J 368129..368974 (+) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein Regulator
  SAFDA_RS01655 (SAFDA_0320) - 369131..370012 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  SAFDA_RS01660 (SAFDA_0321) - 370042..370245 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  SAFDA_RS01665 (SAFDA_0322) ychF 370257..371354 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  SAFDA_RS01670 (SAFDA_0323) - 371440..371631 (-) 192 WP_001052483.1 hypothetical protein -
  SAFDA_RS01675 (SAFDA_0324) rpsF 371875..372171 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  SAFDA_RS01680 (SAFDA_0325) ssbA 372192..372695 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SAFDA_RS01685 (SAFDA_0326) rpsR 372747..372989 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32869.88 Da        Isoelectric Point: 10.0091

>NTDB_id=56679 SAFDA_RS01650 WP_001566903.1 368129..368974(+) (spo0J) [Staphylococcus aureus strain FDA209P]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFLRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=56679 SAFDA_RS01650 WP_001566903.1 368129..368974(+) (spo0J) [Staphylococcus aureus strain FDA209P]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTCTAAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384

Multiple sequence alignment