Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM16_RS09895 Genome accession   NZ_CP074885
Coordinates   2019224..2019853 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2010C_3902     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2014224..2024853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM16_RS09875 (KIM16_09730) ycbZ 2014626..2016386 (-) 1761 WP_000156528.1 AAA family ATPase -
  KIM16_RS09880 (KIM16_09735) matP 2016572..2017024 (+) 453 WP_000877167.1 macrodomain Ter protein MatP -
  KIM16_RS09885 (KIM16_09740) ompA 2017099..2018139 (-) 1041 WP_000750416.1 porin OmpA -
  KIM16_RS09890 (KIM16_09745) sulA 2018496..2019005 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM16_RS09895 (KIM16_09750) sxy/tfoX 2019224..2019853 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM16_RS09900 (KIM16_09755) yccS 2019816..2021978 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM16_RS09905 (KIM16_09760) yccF 2021988..2022434 (-) 447 WP_032343854.1 YccF domain-containing protein -
  KIM16_RS09910 (KIM16_09765) helD 2022557..2024611 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566672 KIM16_RS09895 WP_000839153.1 2019224..2019853(+) (sxy/tfoX) [Escherichia coli strain 2010C_3902]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566672 KIM16_RS09895 WP_000839153.1 2019224..2019853(+) (sxy/tfoX) [Escherichia coli strain 2010C_3902]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1