Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPOK310_RS06885 Genome accession   NC_020509
Coordinates   1413213..1413788 (-) Length   191 a.a.
NCBI ID   WP_015429484.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408213..1418788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS08635 - 1409935..1411144 (-) 1210 Protein_1337 restriction endonuclease subunit S -
  HPOK310_RS06880 (HPOK310_1321) - 1411141..1413180 (-) 2040 WP_015429483.1 class I SAM-dependent DNA methyltransferase -
  HPOK310_RS06885 (HPOK310_1322) comFC 1413213..1413788 (-) 576 WP_015429484.1 ComF family protein Machinery gene
  HPOK310_RS06890 (HPOK310_1323) tmk 1413776..1414351 (-) 576 WP_015429485.1 dTMP kinase -
  HPOK310_RS06895 (HPOK310_1324) coaD 1414353..1414826 (-) 474 WP_015429486.1 pantetheine-phosphate adenylyltransferase -
  HPOK310_RS06900 (HPOK310_1325) - 1414826..1415389 (-) 564 WP_015429487.1 UbiX family flavin prenyltransferase -
  HPOK310_RS06905 (HPOK310_1326) flgA 1415399..1416055 (-) 657 WP_015429488.1 flagellar basal body P-ring formation chaperone FlgA -
  HPOK310_RS06910 (HPOK310_1327) uvrD 1416052..1418097 (-) 2046 WP_015429489.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21361.98 Da        Isoelectric Point: 9.4455

>NTDB_id=56653 HPOK310_RS06885 WP_015429484.1 1413213..1413788(-) (comFC) [Helicobacter pylori OK310]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLKFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=56653 HPOK310_RS06885 WP_015429484.1 1413213..1413788(-) (comFC) [Helicobacter pylori OK310]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTAAATACCCCCCTTTATGGCATCGCCATTGATGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGA
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment