Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOK310_RS01720 Genome accession   NC_020509
Coordinates   349382..349786 (+) Length   134 a.a.
NCBI ID   WP_015428730.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344382..354786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS01685 (HPOK310_0333) - 344554..345492 (-) 939 WP_015428725.1 tetraacyldisaccharide 4'-kinase -
  HPOK310_RS01690 (HPOK310_0334) - 345489..346271 (-) 783 WP_015428726.1 NAD+ synthase -
  HPOK310_RS01700 (HPOK310_0335) ilvC 346520..347512 (+) 993 WP_015428727.1 ketol-acid reductoisomerase -
  HPOK310_RS01705 (HPOK310_0336) minD 347537..348343 (+) 807 WP_015428728.1 septum site-determining protein MinD -
  HPOK310_RS01710 (HPOK310_0337) minE 348340..348573 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPOK310_RS01715 (HPOK310_0338) dprA 348585..349385 (+) 801 WP_015428729.1 DNA-processing protein DprA Machinery gene
  HPOK310_RS01720 (HPOK310_0339) dprB 349382..349786 (+) 405 WP_015428730.1 Holliday junction resolvase RuvX Machinery gene
  HPOK310_RS01725 (HPOK310_0340) - 349913..350275 (+) 363 WP_015428731.1 tetratricopeptide repeat protein -
  HPOK310_RS01730 (HPOK310_0341) - 350464..350802 (+) 339 WP_015428732.1 hypothetical protein -
  HPOK310_RS01735 (HPOK310_0342) - 350786..351346 (+) 561 WP_015428733.1 hypothetical protein -
  HPOK310_RS01740 (HPOK310_0343) - 351357..351521 (+) 165 WP_015428734.1 hypothetical protein -
  HPOK310_RS08530 (HPOK310_0345) - 351771..352038 (+) 268 Protein_341 lysozyme -
  HPOK310_RS07895 - 352417..352741 (+) 325 Protein_342 DUF1294 domain-containing protein -
  HPOK310_RS01755 (HPOK310_0347) - 352741..353526 (+) 786 WP_015428738.1 hypothetical protein -
  HPOK310_RS01760 (HPOK310_0348) - 353516..354571 (+) 1056 WP_015428739.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15339.85 Da        Isoelectric Point: 9.7396

>NTDB_id=56644 HPOK310_RS01720 WP_015428730.1 349382..349786(+) (dprB) [Helicobacter pylori OK310]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=56644 HPOK310_RS01720 WP_015428730.1 349382..349786(+) (dprB) [Helicobacter pylori OK310]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCTTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAACGCTATTATCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment