Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPOK113_RS07155 | Genome accession | NC_020508 |
| Coordinates | 1468435..1469010 (-) | Length | 191 a.a. |
| NCBI ID | WP_015428359.1 | Uniprot ID | - |
| Organism | Helicobacter pylori OK113 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1463435..1474010
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOK113_RS07145 (HPOK113_1384) | - | 1465137..1466366 (-) | 1230 | WP_015428357.1 | restriction endonuclease subunit S | - |
| HPOK113_RS07150 (HPOK113_1385) | - | 1466363..1468402 (-) | 2040 | WP_015428358.1 | class I SAM-dependent DNA methyltransferase | - |
| HPOK113_RS07155 (HPOK113_1386) | comFC | 1468435..1469010 (-) | 576 | WP_015428359.1 | ComF family protein | Machinery gene |
| HPOK113_RS07160 (HPOK113_1387) | tmk | 1468998..1469573 (-) | 576 | WP_015428360.1 | dTMP kinase | - |
| HPOK113_RS07165 (HPOK113_1388) | coaD | 1469575..1470048 (-) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| HPOK113_RS07170 (HPOK113_1389) | - | 1470048..1470611 (-) | 564 | WP_015428361.1 | UbiX family flavin prenyltransferase | - |
| HPOK113_RS07175 (HPOK113_1390) | flgA | 1470621..1471277 (-) | 657 | WP_015428362.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPOK113_RS07180 (HPOK113_1391) | uvrD | 1471274..1473319 (-) | 2046 | WP_015428363.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21262.90 Da Isoelectric Point: 9.4455
>NTDB_id=56633 HPOK113_RS07155 WP_015428359.1 1468435..1469010(-) (comFC) [Helicobacter pylori OK113]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=56633 HPOK113_RS07155 WP_015428359.1 1468435..1469010(-) (comFC) [Helicobacter pylori OK113]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCTTAAATTGCTTGAACGATTTGCCCTTAAGCTTGAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCTACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCTTAAATTGCTTGAACGATTTGCCCTTAAGCTTGAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCTACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCATTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
38.144 |
100 |
0.387 |