Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPOK113_RS01775 Genome accession   NC_020508
Coordinates   351791..352195 (+) Length   134 a.a.
NCBI ID   WP_015427536.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 346791..357195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS01740 (HPOK113_0336) - 346961..347899 (-) 939 WP_015427531.1 tetraacyldisaccharide 4'-kinase -
  HPOK113_RS01745 (HPOK113_0337) - 347896..348678 (-) 783 WP_015427532.1 NAD+ synthase -
  HPOK113_RS01755 (HPOK113_0338) ilvC 348929..349921 (+) 993 WP_015427533.1 ketol-acid reductoisomerase -
  HPOK113_RS01760 (HPOK113_0339) minD 349946..350752 (+) 807 WP_015427534.1 septum site-determining protein MinD -
  HPOK113_RS01765 (HPOK113_0340) minE 350749..350982 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPOK113_RS01770 (HPOK113_0341) dprA 350994..351794 (+) 801 WP_015427535.1 DNA-processing protein DprA Machinery gene
  HPOK113_RS01775 (HPOK113_0342) dprB 351791..352195 (+) 405 WP_015427536.1 Holliday junction resolvase RuvX Machinery gene
  HPOK113_RS01780 (HPOK113_0343) - 352362..352526 (+) 165 WP_015427537.1 SEL1-like repeat protein -
  HPOK113_RS01785 (HPOK113_0344) - 352772..353110 (+) 339 WP_015427538.1 hypothetical protein -
  HPOK113_RS01790 (HPOK113_0345) - 353094..353654 (+) 561 WP_015427539.1 hypothetical protein -
  HPOK113_RS01795 (HPOK113_0346) - 353683..353916 (+) 234 WP_015427540.1 glycoside hydrolase family protein -
  HPOK113_RS01800 (HPOK113_0347) - 354083..354349 (+) 267 WP_000404335.1 hypothetical protein -
  HPOK113_RS08780 - 354407..354535 (+) 129 WP_029646076.1 hypothetical protein -
  HPOK113_RS08035 - 354688..355069 (+) 382 Protein_346 DUF1294 domain-containing protein -
  HPOK113_RS01820 (HPOK113_0349) - 355069..355857 (+) 789 WP_015427543.1 hypothetical protein -
  HPOK113_RS01825 (HPOK113_0350) - 355847..356941 (+) 1095 WP_015427544.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15308.75 Da        Isoelectric Point: 8.4898

>NTDB_id=56620 HPOK113_RS01775 WP_015427536.1 351791..352195(+) (dprB) [Helicobacter pylori OK113]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFISEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKDH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=56620 HPOK113_RS01775 WP_015427536.1 351791..352195(+) (dprB) [Helicobacter pylori OK113]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGTGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAGTGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAGATC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948

Multiple sequence alignment