Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JRY14_RS23195 Genome accession   NZ_CP074714
Coordinates   4292845..4294584 (-) Length   579 a.a.
NCBI ID   WP_086412469.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain B13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4288721..4300368 4292845..4294584 within 0


Gene organization within MGE regions


Location: 4288721..4300368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY14_RS23180 (JRY14_23150) - 4288721..4289950 (+) 1230 WP_086411350.1 IS110 family transposase -
  JRY14_RS23185 (JRY14_23155) spo0A 4290343..4291137 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  JRY14_RS23190 (JRY14_23160) spoIVB 4291428..4292726 (-) 1299 WP_086412470.1 SpoIVB peptidase -
  JRY14_RS23195 (JRY14_23165) recN 4292845..4294584 (-) 1740 WP_086412469.1 DNA repair protein RecN Machinery gene
  JRY14_RS23200 (JRY14_23170) - 4294855..4296285 (-) 1431 WP_001056973.1 IS4 family transposase -
  JRY14_RS23205 (JRY14_23175) - 4296518..4297954 (-) 1437 WP_062804561.1 IS4 family transposase -
  JRY14_RS23210 (JRY14_23180) argR 4298180..4298629 (-) 450 WP_001032580.1 arginine repressor ArgR -
  JRY14_RS23215 (JRY14_23185) - 4299139..4300368 (+) 1230 WP_086411350.1 IS110 family transposase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65882.01 Da        Isoelectric Point: 4.8277

>NTDB_id=565987 JRY14_RS23195 WP_086412469.1 4292845..4294584(-) (recN) [Bacillus thuringiensis strain B13]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFFKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=565987 JRY14_RS23195 WP_086412469.1 4292845..4294584(-) (recN) [Bacillus thuringiensis strain B13]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAGCAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAGGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCTTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCGCCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTTTAAGCATCAAGGAGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCGCAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACGGAGCAT
GCGAAAGAATTACTTACGCAAGCACATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599