Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JRY14_RS23185 Genome accession   NZ_CP074714
Coordinates   4290343..4291137 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus thuringiensis strain B13     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4288721..4300368 4290343..4291137 within 0


Gene organization within MGE regions


Location: 4288721..4300368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY14_RS23180 (JRY14_23150) - 4288721..4289950 (+) 1230 WP_086411350.1 IS110 family transposase -
  JRY14_RS23185 (JRY14_23155) spo0A 4290343..4291137 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  JRY14_RS23190 (JRY14_23160) spoIVB 4291428..4292726 (-) 1299 WP_086412470.1 SpoIVB peptidase -
  JRY14_RS23195 (JRY14_23165) recN 4292845..4294584 (-) 1740 WP_086412469.1 DNA repair protein RecN Machinery gene
  JRY14_RS23200 (JRY14_23170) - 4294855..4296285 (-) 1431 WP_001056973.1 IS4 family transposase -
  JRY14_RS23205 (JRY14_23175) - 4296518..4297954 (-) 1437 WP_062804561.1 IS4 family transposase -
  JRY14_RS23210 (JRY14_23180) argR 4298180..4298629 (-) 450 WP_001032580.1 arginine repressor ArgR -
  JRY14_RS23215 (JRY14_23185) - 4299139..4300368 (+) 1230 WP_086411350.1 IS110 family transposase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=565986 JRY14_RS23185 WP_011110369.1 4290343..4291137(-) (spo0A) [Bacillus thuringiensis strain B13]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=565986 JRY14_RS23185 WP_011110369.1 4290343..4291137(-) (spo0A) [Bacillus thuringiensis strain B13]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818