Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IS508_RS18390 Genome accession   NZ_CP074695
Coordinates   3825043..3825516 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain X4-107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3820043..3830516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS18365 - 3820507..3822612 (-) 2106 WP_001117590.1 HD domain-containing protein -
  IS508_RS18370 - 3822652..3822781 (-) 130 Protein_3575 hypothetical protein -
  IS508_RS18375 rpoZ 3822820..3823098 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IS508_RS18380 gmk 3823171..3823800 (-) 630 WP_000015937.1 guanylate kinase -
  IS508_RS18385 ispH 3823923..3824873 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IS508_RS18390 fimU 3825043..3825516 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  IS508_RS18395 pilV 3825510..3826070 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  IS508_RS18400 pilW 3826071..3827072 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  IS508_RS18405 pilX 3827069..3827887 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=565827 IS508_RS18390 WP_001214061.1 3825043..3825516(+) (fimU) [Acinetobacter baumannii strain X4-107]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=565827 IS508_RS18390 WP_001214061.1 3825043..3825516(+) (fimU) [Acinetobacter baumannii strain X4-107]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987