Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IS508_RS18405 Genome accession   NZ_CP074695
Coordinates   3827069..3827887 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain X4-107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3822069..3832887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS18370 - 3822652..3822781 (-) 130 Protein_3575 hypothetical protein -
  IS508_RS18375 rpoZ 3822820..3823098 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IS508_RS18380 gmk 3823171..3823800 (-) 630 WP_000015937.1 guanylate kinase -
  IS508_RS18385 ispH 3823923..3824873 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IS508_RS18390 fimU 3825043..3825516 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  IS508_RS18395 pilV 3825510..3826070 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  IS508_RS18400 pilW 3826071..3827072 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  IS508_RS18405 pilX 3827069..3827887 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IS508_RS18410 pilY1 3827899..3831753 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  IS508_RS18415 pilY2 3831766..3832248 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  IS508_RS18420 pilE 3832245..3832670 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=565830 IS508_RS18405 WP_000149374.1 3827069..3827887(+) (pilX) [Acinetobacter baumannii strain X4-107]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=565830 IS508_RS18405 WP_000149374.1 3827069..3827887(+) (pilX) [Acinetobacter baumannii strain X4-107]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993