Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IS508_RS18280 Genome accession   NZ_CP074695
Coordinates   3799757..3800284 (+) Length   175 a.a.
NCBI ID   WP_000695061.1    Uniprot ID   A0A506J6X2
Organism   Acinetobacter baumannii strain X4-107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3794757..3805284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS18265 pilM 3797310..3798368 (+) 1059 WP_032043164.1 pilus assembly protein PilM Machinery gene
  IS508_RS18270 pilN 3798368..3799009 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  IS508_RS18275 pilO 3799006..3799746 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IS508_RS18280 pilP 3799757..3800284 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  IS508_RS18285 pilQ 3800351..3802516 (+) 2166 WP_001017028.1 type IV pilus secretin PilQ Machinery gene
  IS508_RS18290 aroK 3802528..3803097 (+) 570 WP_000643712.1 shikimate kinase AroK -
  IS508_RS18295 aroB 3803126..3804208 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  IS508_RS18300 - 3804224..3805099 (+) 876 WP_000218802.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19445.72 Da        Isoelectric Point: 8.9898

>NTDB_id=565824 IS508_RS18280 WP_000695061.1 3799757..3800284(+) (pilP) [Acinetobacter baumannii strain X4-107]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIIHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=565824 IS508_RS18280 WP_000695061.1 3799757..3800284(+) (pilP) [Acinetobacter baumannii strain X4-107]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTATCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A506J6X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714