Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IS508_RS18270 Genome accession   NZ_CP074695
Coordinates   3798368..3799009 (+) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain X4-107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3793368..3804009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS18250 - 3793415..3793747 (+) 333 WP_000169602.1 hypothetical protein -
  IS508_RS18255 - 3793750..3794574 (+) 825 WP_100221754.1 putative RNA methyltransferase -
  IS508_RS18260 ponA 3794592..3797147 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  IS508_RS18265 pilM 3797310..3798368 (+) 1059 WP_032043164.1 pilus assembly protein PilM Machinery gene
  IS508_RS18270 pilN 3798368..3799009 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  IS508_RS18275 pilO 3799006..3799746 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IS508_RS18280 pilP 3799757..3800284 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  IS508_RS18285 pilQ 3800351..3802516 (+) 2166 WP_001017028.1 type IV pilus secretin PilQ Machinery gene
  IS508_RS18290 aroK 3802528..3803097 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=565822 IS508_RS18270 WP_000201226.1 3798368..3799009(+) (pilN) [Acinetobacter baumannii strain X4-107]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=565822 IS508_RS18270 WP_000201226.1 3798368..3799009(+) (pilN) [Acinetobacter baumannii strain X4-107]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709