Detailed information NTG0056582

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SITYG_RS10170
• Genome accession: NZ_AP014880
• Coordinates: 1989986..1991083 (+)
• Length: 365 a.a.
• NCBI ID: WP_021003369.1
• Uniprot ID: T1ZHB6
• Organism: Streptococcus intermedius strain TYG1620
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1984986..1996083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SITYG_RS10145 (SITYG_20020)	pgsA	1985465..1986004 (-)	540	WP_003077406.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SITYG_RS10150 (SITYG_20030)	rodZ	1986015..1986827 (-)	813	WP_096363298.1	cytoskeleton protein RodZ	-
SITYG_RS10155 (SITYG_20040)	yfmH	1986886..1988181 (-)	1296	WP_096363299.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SITYG_RS10160 (SITYG_20050)	yfmF	1988181..1989428 (-)	1248	WP_096363300.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SITYG_RS10165 (SITYG_20060)	yaaA	1989604..1989984 (+)	381	WP_096363301.1	S4 domain-containing protein YaaA	-
SITYG_RS10170 (SITYG_20070)	recF	1989986..1991083 (+)	1098	WP_021003369.1	DNA replication/repair protein RecF	Machinery gene
SITYG_RS10175 (SITYG_20080)	guaB	1991914..1993395 (-)	1482	WP_021003370.1	IMP dehydrogenase	-
SITYG_RS10180 (SITYG_20090)	trpS	1993533..1994558 (-)	1026	WP_003075477.1	tryptophan--tRNA ligase	-
SITYG_RS10185 (SITYG_20100)	galE	1994640..1995635 (-)	996	WP_312023607.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42130.46 Da
• Isoelectric Point: 8.8028

>NTDB_id=56582 SITYG_RS10170 WP_021003369.1 1989986..1991083(+) (recF) [Streptococcus intermedius strain TYG1620]
MWLKNLQIQYFRNYKLTEIDFHPGLNIFLGENAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSNDSLKISGQLAKETGN
ISLEIDLTPKGRTTKVNHLKQSKLSDYVGNMNVVLFAPEDLQLIKGTPALRRKFIDIELGQIKPIYLSDLSQYHHVLKQR
NAYLKAAKKIDETFLTVLDDQLVEFGCRVMQHRTEFLKKLEHFGQQKHLELSSNLENLTIKYCSSIPLSDPNKLKESFQI
ALRQSRSRDLFKKNTGIGPHRDDIAFYINNMNATFGSQGQHRSMVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLETISQNIQTFITTTTLEHLKHLPSDIKIFSIHDGHFMENQV

Nucleotide

• Length: 1098 bp

>NTDB_id=56582 SITYG_RS10170 WP_021003369.1 1989986..1991083(+) (recF) [Streptococcus intermedius strain TYG1620]
ATGTGGTTAAAAAACTTACAAATTCAATATTTTCGCAATTATAAATTAACTGAAATAGATTTTCACCCTGGTCTCAATAT
TTTTTTAGGGGAAAACGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCGTTGACACGAAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAACGATTCTTTAAAAATTTCTGGACAACTTGCCAAAGAAACTGGGAAT
ATCTCTTTAGAAATTGACTTGACCCCTAAAGGAAGAACGACAAAGGTTAATCATTTAAAACAAAGTAAATTATCCGATTA
TGTTGGAAATATGAATGTTGTTCTATTTGCTCCAGAAGATTTACAACTGATTAAAGGGACACCAGCTCTTAGACGGAAAT
TTATCGACATAGAATTAGGGCAAATTAAACCAATCTATTTATCCGATTTATCACAATATCATCATGTTTTAAAACAACGA
AATGCTTATCTAAAGGCAGCAAAAAAAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGCTAGTAGAGTTTGGTTG
CCGTGTTATGCAACATCGAACAGAGTTTCTCAAAAAACTAGAACACTTTGGTCAACAAAAACATTTAGAGCTTTCAAGTA
ATTTAGAAAACTTAACCATTAAGTATTGCTCTTCTATTCCACTTTCAGATCCCAATAAATTGAAAGAATCTTTCCAAATT
GCATTAAGACAAAGCCGTAGTAGAGATTTATTTAAAAAAAATACTGGAATTGGTCCCCATCGAGATGATATCGCTTTTTA
TATTAATAACATGAATGCCACTTTTGGCAGTCAAGGACAACATCGAAGTATGGTCCTATCTCTTAAGTTGGCAGAGATTG
AACTTATGGAAACTGTGACCAAAGAAAAACCAATTCTTCTACTTGACGATGTTATGAGCGAACTTGACAACAATCGTCAA
TTGAATTTGCTTGAAACTATCTCTCAAAATATACAAACATTTATTACAACAACAACTTTAGAACATCTGAAACATTTGCC
TTCTGATATTAAAATTTTCTCAATTCATGATGGACATTTTATGGAAAATCAAGTGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-356)

3D structure

• AlphaFold DB: T1ZHB6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	72.626	98.082	0.712
recF	Bacillus subtilis subsp. subtilis str. 168	47.443	96.438	0.458