Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IS508_RS14850 Genome accession   NZ_CP074695
Coordinates   3088863..3089723 (+) Length   286 a.a.
NCBI ID   WP_279446766.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain X4-107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3083863..3094723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS14830 secG 3084467..3084796 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  IS508_RS14835 tpiA 3084809..3085603 (-) 795 WP_078202916.1 triose-phosphate isomerase -
  IS508_RS14840 pilB 3085895..3087607 (+) 1713 WP_001274988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IS508_RS14845 pilC 3087637..3088863 (+) 1227 WP_279446765.1 type II secretion system F family protein Machinery gene
  IS508_RS14850 pilD 3088863..3089723 (+) 861 WP_279446766.1 A24 family peptidase Machinery gene
  IS508_RS14855 coaE 3089725..3090321 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  IS508_RS14860 - 3090318..3091232 (-) 915 WP_000075015.1 DMT family transporter -
  IS508_RS14865 rlmB 3091268..3092017 (-) 750 WP_279446767.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IS508_RS14870 - 3092119..3092445 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IS508_RS14875 - 3092522..3093832 (-) 1311 WP_272412430.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32170.58 Da        Isoelectric Point: 7.5058

>NTDB_id=565810 IS508_RS14850 WP_279446766.1 3088863..3089723(+) (pilD) [Acinetobacter baumannii strain X4-107]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=565810 IS508_RS14850 WP_279446766.1 3088863..3089723(+) (pilD) [Acinetobacter baumannii strain X4-107]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

99.65

100

0.997
  pilD Acinetobacter nosocomialis M2

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

52.941

95.105

0.503
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437