Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KH263_RS16755 Genome accession   NZ_CP074685
Coordinates   3456020..3456709 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3451020..3461709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH263_RS16720 (KH263_16720) fliW 3451111..3451542 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  KH263_RS16725 (KH263_16725) - 3451572..3452141 (-) 570 WP_003151397.1 DUF6470 family protein -
  KH263_RS16730 (KH263_16730) flgL 3452232..3453149 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  KH263_RS16735 (KH263_16735) flgK 3453161..3454678 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  KH263_RS16740 (KH263_16740) - 3454694..3455176 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KH263_RS16745 (KH263_16745) flgM 3455191..3455457 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  KH263_RS16750 (KH263_16750) - 3455527..3455946 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  KH263_RS16755 (KH263_16755) comFC 3456020..3456709 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  KH263_RS16760 (KH263_16760) - 3456715..3456999 (-) 285 WP_057080260.1 competence protein ComFB -
  KH263_RS16765 (KH263_16765) comFA 3457057..3458442 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  KH263_RS16770 (KH263_16770) - 3458550..3459398 (-) 849 WP_024085866.1 DegV family protein -
  KH263_RS16775 (KH263_16775) degU 3459496..3460185 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KH263_RS16780 (KH263_16780) degS 3460262..3461425 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=565753 KH263_RS16755 WP_196616643.1 3456020..3456709(-) (comFC) [Bacillus velezensis strain VTX9]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=565753 KH263_RS16755 WP_196616643.1 3456020..3456709(-) (comFC) [Bacillus velezensis strain VTX9]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603