Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LU695_RS05335 Genome accession   NZ_CP092500
Coordinates   1070807..1071544 (-) Length   245 a.a.
NCBI ID   WP_000197674.1    Uniprot ID   -
Organism   Escherichia coli strain A30     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065807..1076544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU695_RS05305 (LU695_05300) yfiL 1065964..1066329 (-) 366 WP_087933946.1 DUF2799 domain-containing protein -
  LU695_RS05310 (LU695_05305) aroF 1066539..1067609 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LU695_RS05315 (LU695_05310) tyrA 1067620..1068741 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LU695_RS05320 (LU695_05315) pheA 1068784..1069944 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  LU695_RS05325 (LU695_05320) pheL 1070044..1070091 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LU695_RS05330 (LU695_05325) raiA 1070195..1070536 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LU695_RS05335 (LU695_05330) comL 1070807..1071544 (-) 738 WP_000197674.1 outer membrane protein assembly factor BamD Machinery gene
  LU695_RS05340 (LU695_05335) rluD 1071679..1072659 (+) 981 WP_258314145.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LU695_RS05345 (LU695_05340) yfiH 1072656..1073387 (+) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  LU695_RS05350 (LU695_05345) clpC 1073517..1076090 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27825.41 Da        Isoelectric Point: 6.4874

>NTDB_id=565527 LU695_RS05335 WP_000197674.1 1070807..1071544(-) (comL) [Escherichia coli strain A30]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
PDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=565527 LU695_RS05335 WP_000197674.1 1070807..1071544(-) (comL) [Escherichia coli strain A30]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
CCCGATGCCACCAAGCGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376