Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SITYG_RS07230 Genome accession   NZ_AP014880
Coordinates   1429120..1429716 (-) Length   198 a.a.
NCBI ID   WP_009569141.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1424120..1434716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS07205 (SITYG_14270) - 1424389..1425063 (-) 675 WP_173672249.1 TIGR02206 family membrane protein -
  SITYG_RS07210 (SITYG_14280) - 1425070..1425774 (-) 705 WP_037582783.1 TIGR02206 family membrane protein -
  SITYG_RS07215 (SITYG_14290) - 1425781..1426329 (-) 549 WP_096363043.1 DUF1697 domain-containing protein -
  SITYG_RS07220 (SITYG_14300) - 1426319..1427689 (-) 1371 WP_096363044.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SITYG_RS07225 (SITYG_14310) - 1427943..1428989 (-) 1047 WP_096363340.1 D-alanine--D-alanine ligase -
  SITYG_RS07230 (SITYG_14320) recR 1429120..1429716 (-) 597 WP_009569141.1 recombination mediator RecR Machinery gene
  SITYG_RS07235 (SITYG_14330) pbp2b 1429727..1431787 (-) 2061 WP_009569142.1 penicillin-binding protein PBP2B -
  SITYG_RS07240 (SITYG_14340) - 1431944..1432636 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  SITYG_RS07245 (SITYG_14350) - 1432774..1433235 (-) 462 WP_009569143.1 Fur family transcriptional regulator -
  SITYG_RS07250 (SITYG_14360) - 1433404..1433679 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  SITYG_RS07255 (SITYG_14370) - 1433808..1434641 (-) 834 WP_003076577.1 DegV family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21638.65 Da        Isoelectric Point: 4.3571

>NTDB_id=56541 SITYG_RS07230 WP_009569141.1 1429120..1429716(-) (recR) [Streptococcus intermedius strain TYG1620]
MLYPTPIAKLIESFSKLPGIGIKSATRLAFYTISMSDDDVNEFAKNLLAAKRELTYCSTCGNLTDDNPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=56541 SITYG_RS07230 WP_009569141.1 1429120..1429716(-) (recR) [Streptococcus intermedius strain TYG1620]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGAAAGTTTTTCAAAATTACCAGGAATTGGCATCAAATCAGCAACACG
TTTGGCATTTTATACCATTAGCATGAGTGATGATGATGTTAATGAATTTGCTAAAAATTTACTTGCAGCAAAACGTGAGT
TAACATATTGCTCTACTTGTGGGAATTTAACGGATGACAATCCCTGTGCTATCTGTACCGATGAGACTCGTGACCAATCG
ACTATTTTGGTTGTAGAAGATAGCCGAGATGTCTCTGCTATGGAAAACATTCAAGAATATCATGGCTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGTCCAGATGACATCAATCTGAAAAGTTTAATCACACGATTGATGGATA
GTGAAGTGACAGAAGTGATTGTAGCAACTAATGCAACAGCAGATGGAGAAGCAACTTCCATGTATATCTCACGAGTGTTA
AAGCCAGCTGGTATCAAAGTGACACGTCTCGCTCGAGGATTAGCAGTTGGTTCTGATATTGAATATGCAGATGAAGTGAC
TTTGCTTCGAGCCATTGAGAATCGTACGGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

89.394

100

0.894
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment