Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KIJ28_RS03295 Genome accession   NZ_CP074578
Coordinates   750588..752180 (-) Length   530 a.a.
NCBI ID   WP_016567133.1    Uniprot ID   A0AB74AAW4
Organism   Pseudomonas syringae strain Susan2139     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 745588..757180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIJ28_RS03280 (KIJ28_03280) - 747582..747989 (+) 408 WP_046266217.1 type IV pilin protein -
  KIJ28_RS03285 (KIJ28_03285) thiO 748015..749118 (+) 1104 WP_046266216.1 glycine oxidase ThiO -
  KIJ28_RS03290 (KIJ28_03290) pilR 749248..750585 (-) 1338 WP_074955982.1 sigma-54 dependent transcriptional regulator Regulator
  KIJ28_RS03295 (KIJ28_03295) pilS 750588..752180 (-) 1593 WP_016567133.1 ATP-binding protein Regulator
  KIJ28_RS03300 (KIJ28_03300) - 752170..752409 (-) 240 WP_032607804.1 PP0621 family protein -
  KIJ28_RS03305 (KIJ28_03305) - 752529..753551 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  KIJ28_RS03310 (KIJ28_03310) rluD 753701..754663 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIJ28_RS03315 (KIJ28_03315) pgeF 754660..755388 (+) 729 WP_213568004.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58030.93 Da        Isoelectric Point: 6.8620

>NTDB_id=565396 KIJ28_RS03295 WP_016567133.1 750588..752180(-) (pilS) [Pseudomonas syringae strain Susan2139]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQSALHLLSQEQLVGQMID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSTAPN
QAIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNEPRSDLPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=565396 KIJ28_RS03295 WP_016567133.1 750588..752180(-) (pilS) [Pseudomonas syringae strain Susan2139]
GTGACCGCTGATTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTGCGGCTGTACCACCTTTATCGACTGACCAT
CGGCGTCGTACTGGTGCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGATGCGATCATGCTCTCCGCGCTGTTCTACGCAGCGGGCGGGCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTCTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCTTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAAGTCAGCGAGGTACTGGCCGAACAGCG
CGCAGCGGATGTCGACAGCCTCGAGGCACTCAACGCACTCATTTTGCAGCGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAATCACCAGGTGCTGCTGGCCAACCAGAGTGCCTTGCACCTGCTGAGCCAGGAGCAACTGGTCGGCCAGATGATCGAC
ACCTGCTCGCCGCAGCTGGTTGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGTATCACCACCGC
CCCCGTCGGGCTGGTACTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCACCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCTCAACTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGGCGCATTGATCGGGTCATCGAAAATGTCCTGCAGCTGTCGCGCAGACGCG
AGGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGCTCCACAGCGCCCAAT
CAGGCGATTCATGTCGACATCAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAGTTGACGCAGATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCACAATGAACCGA
GAAGCGATTTGCCTACGCTGGAAGTGCTGGACGATGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCATCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGCTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611