Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KIH94_RS17640 Genome accession   NZ_CP074571
Coordinates   3434109..3434798 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain BYS2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3429109..3439798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS17605 (KIH94_17605) flgN 3429289..3429771 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KIH94_RS17610 (KIH94_17610) flgM 3429787..3430053 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  KIH94_RS17615 (KIH94_17615) yvyF 3430134..3430553 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KIH94_RS17620 (KIH94_17620) comFC 3430627..3431349 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  KIH94_RS17625 (KIH94_17625) comFB 3431313..3431609 (-) 297 WP_015483764.1 late competence protein ComFB -
  KIH94_RS17630 (KIH94_17630) comFA 3431669..3433060 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  KIH94_RS17635 (KIH94_17635) fakBA 3433166..3434011 (-) 846 WP_003227986.1 DegV family protein -
  KIH94_RS17640 (KIH94_17640) degU 3434109..3434798 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KIH94_RS17645 (KIH94_17645) degS 3434881..3436038 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KIH94_RS17650 (KIH94_17650) yvyE 3436255..3436908 (+) 654 WP_003227979.1 YigZ family protein -
  KIH94_RS17655 (KIH94_17655) tagV 3436908..3438020 (+) 1113 WP_213417623.1 LCP family protein -
  KIH94_RS17660 (KIH94_17660) tagO 3438093..3439169 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=565335 KIH94_RS17640 WP_003219701.1 3434109..3434798(-) (degU) [Bacillus subtilis strain BYS2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=565335 KIH94_RS17640 WP_003219701.1 3434109..3434798(-) (degU) [Bacillus subtilis strain BYS2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1