Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KIH94_RS17630 Genome accession   NZ_CP074571
Coordinates   3431669..3433060 (-) Length   463 a.a.
NCBI ID   WP_015384785.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3426669..3438060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS17595 (KIH94_17595) flgL 3426840..3427736 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  KIH94_RS17600 (KIH94_17600) flgK 3427747..3429270 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  KIH94_RS17605 (KIH94_17605) flgN 3429289..3429771 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KIH94_RS17610 (KIH94_17610) flgM 3429787..3430053 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  KIH94_RS17615 (KIH94_17615) yvyF 3430134..3430553 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KIH94_RS17620 (KIH94_17620) comFC 3430627..3431349 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  KIH94_RS17625 (KIH94_17625) comFB 3431313..3431609 (-) 297 WP_015483764.1 late competence protein ComFB -
  KIH94_RS17630 (KIH94_17630) comFA 3431669..3433060 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  KIH94_RS17635 (KIH94_17635) fakBA 3433166..3434011 (-) 846 WP_003227986.1 DegV family protein -
  KIH94_RS17640 (KIH94_17640) degU 3434109..3434798 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KIH94_RS17645 (KIH94_17645) degS 3434881..3436038 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KIH94_RS17650 (KIH94_17650) yvyE 3436255..3436908 (+) 654 WP_003227979.1 YigZ family protein -
  KIH94_RS17655 (KIH94_17655) tagV 3436908..3438020 (+) 1113 WP_213417623.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52498.54 Da        Isoelectric Point: 9.9354

>NTDB_id=565334 KIH94_RS17630 WP_015384785.1 3431669..3433060(-) (comFA) [Bacillus subtilis strain BYS2]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLNLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=565334 KIH94_RS17630 WP_015384785.1 3431669..3433060(-) (comFA) [Bacillus subtilis strain BYS2]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGTTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCAATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985