Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KIH94_RS15645 Genome accession   NZ_CP074571
Coordinates   3033458..3034102 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028458..3039102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS15610 (KIH94_15610) mrpB 3029651..3030082 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KIH94_RS15615 (KIH94_15615) mrpC 3030082..3030423 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KIH94_RS15620 (KIH94_15620) mrpD 3030416..3031897 (+) 1482 WP_015384516.1 Na+/H+ antiporter subunit D -
  KIH94_RS15625 (KIH94_15625) mrpE 3031903..3032379 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KIH94_RS15630 (KIH94_15630) mrpF 3032379..3032663 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KIH94_RS15635 (KIH94_15635) mnhG 3032647..3033021 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  KIH94_RS15640 (KIH94_15640) yuxO 3033060..3033440 (-) 381 WP_015483631.1 hotdog fold thioesterase -
  KIH94_RS15645 (KIH94_15645) comA 3033458..3034102 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KIH94_RS15650 (KIH94_15650) comP 3034183..3036483 (-) 2301 WP_213417620.1 histidine kinase Regulator
  KIH94_RS15655 (KIH94_15655) comX 3036495..3036659 (-) 165 WP_015384519.1 competence pheromone ComX -
  KIH94_RS15660 (KIH94_15660) - 3036672..3037532 (-) 861 WP_015483633.1 polyprenyl synthetase family protein -
  KIH94_RS15665 (KIH94_15665) degQ 3037717..3037857 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KIH94_RS20760 - 3038079..3038141 (+) 63 Protein_3041 hypothetical protein -
  KIH94_RS15670 (KIH94_15670) - 3038319..3038687 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=565328 KIH94_RS15645 WP_003220716.1 3033458..3034102(-) (comA) [Bacillus subtilis strain BYS2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=565328 KIH94_RS15645 WP_003220716.1 3033458..3034102(-) (comA) [Bacillus subtilis strain BYS2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1