Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MJJ13_RS05690 Genome accession   NZ_CP092449
Coordinates   1155282..1156019 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate TKEC21-17     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150282..1161019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJJ13_RS05660 (MJJ13_05660) yfiL 1150441..1150806 (-) 366 WP_130055760.1 DUF2799 domain-containing protein -
  MJJ13_RS05665 (MJJ13_05665) aroF 1151016..1152086 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MJJ13_RS05670 (MJJ13_05670) tyrA 1152097..1153218 (+) 1122 WP_063119150.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MJJ13_RS05675 (MJJ13_05675) pheA 1153261..1154421 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  MJJ13_RS05680 (MJJ13_05680) pheL 1154519..1154566 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MJJ13_RS05685 (MJJ13_05685) raiA 1154670..1155011 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MJJ13_RS05690 (MJJ13_05690) comL 1155282..1156019 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MJJ13_RS05695 (MJJ13_05695) rluD 1156154..1157134 (+) 981 WP_063119148.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MJJ13_RS05700 (MJJ13_05700) yfiH 1157131..1157862 (+) 732 WP_000040139.1 purine nucleoside phosphorylase YfiH -
  MJJ13_RS05705 (MJJ13_05705) clpC 1157992..1160565 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=565206 MJJ13_RS05690 WP_000197686.1 1155282..1156019(-) (comL) [Escherichia coli isolate TKEC21-17]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=565206 MJJ13_RS05690 WP_000197686.1 1155282..1156019(-) (comL) [Escherichia coli isolate TKEC21-17]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376