Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LXM97_RS09835 Genome accession   NZ_CP092447
Coordinates   2041121..2041516 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain SYN     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2036121..2046516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM97_RS09810 (LXM97_09810) thiE 2036719..2037360 (-) 642 WP_000483147.1 thiamine phosphate synthase -
  LXM97_RS09815 (LXM97_09815) thiM 2037362..2038153 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  LXM97_RS09820 (LXM97_09820) thiD 2038137..2038967 (-) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LXM97_RS09825 (LXM97_09825) tenA 2038960..2039649 (-) 690 WP_000396067.1 thiaminase II -
  LXM97_RS09830 (LXM97_09830) sceD 2040037..2040732 (-) 696 WP_000751997.1 lytic transglycosylase SceD -
  LXM97_RS09835 (LXM97_09835) ssb 2041121..2041516 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LXM97_RS09840 (LXM97_09840) istB 2041659..2042420 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  LXM97_RS09845 (LXM97_09845) istA 2042413..2043705 (-) 1293 WP_000777467.1 IS21 family transposase -
  LXM97_RS09850 (LXM97_09850) - 2043916..2044356 (+) 441 WP_000846746.1 YwpF-like family protein -
  LXM97_RS09855 (LXM97_09855) fabZ 2044413..2044853 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LXM97_RS09860 (LXM97_09860) murA 2044887..2046152 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LXM97_RS09865 (LXM97_09865) - 2046263..2046496 (-) 234 WP_000384520.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=565170 LXM97_RS09835 WP_000932694.1 2041121..2041516(-) (ssb) [Staphylococcus aureus strain SYN]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=565170 LXM97_RS09835 WP_000932694.1 2041121..2041516(-) (ssb) [Staphylococcus aureus strain SYN]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992