Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LXM97_RS00275 Genome accession   NZ_CP092447
Coordinates   66741..67853 (-) Length   370 a.a.
NCBI ID   WP_000775117.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SYN     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 61741..72853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM97_RS00265 (LXM97_00265) gyrA 62100..64760 (-) 2661 WP_000819089.1 DNA gyrase subunit A -
  LXM97_RS00270 (LXM97_00270) gyrB 64797..66731 (-) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LXM97_RS00275 (LXM97_00275) recF 66741..67853 (-) 1113 WP_000775117.1 DNA replication/repair protein RecF Machinery gene
  LXM97_RS00280 (LXM97_00280) yaaA 67850..68095 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  LXM97_RS00285 (LXM97_00285) tnpA 68544..69029 (-) 486 WP_000093393.1 IS200/IS605 family transposase -
  LXM97_RS00290 (LXM97_00290) spa 69309..70763 (-) 1455 WP_000728687.1 staphylococcal protein A -
  LXM97_RS00295 (LXM97_00295) sarS 71184..71936 (-) 753 WP_000876750.1 HTH-type transcriptional regulator SarS -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42431.43 Da        Isoelectric Point: 6.4359

>NTDB_id=565095 LXM97_RS00275 WP_000775117.1 66741..67853(-) (recF) [Staphylococcus aureus strain SYN]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYTQNEAAR
LEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=565095 LXM97_RS00275 WP_000775117.1 66741..67853(-) (recF) [Staphylococcus aureus strain SYN]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGACTAACCCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATACTCAAAATGAAGCGGCACGA
CTTGAAGATATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTATATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

48.525

100

0.489