Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LILO_RS11035 Genome accession   NC_020450
Coordinates   2287126..2287617 (-) Length   163 a.a.
NCBI ID   WP_015427182.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2282126..2292617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS11035 (lilo_2124) comX 2287126..2287617 (-) 492 WP_015427182.1 hypothetical protein Regulator
  LILO_RS11040 (lilo_2125) ezrA 2287878..2289608 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  LILO_RS11045 (lilo_2126) tsf 2289813..2290841 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  LILO_RS11050 (lilo_2127) rpsB 2290963..2291730 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19806.64 Da        Isoelectric Point: 5.3639

>NTDB_id=56498 LILO_RS11035 WP_015427182.1 2287126..2287617(-) (comX) [Lactococcus lactis subsp. lactis IO-1]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPENEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=56498 LILO_RS11035 WP_015427182.1 2287126..2287617(-) (comX) [Lactococcus lactis subsp. lactis IO-1]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACGAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAGCTAAGACGGAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGAAAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

77.301

100

0.773

Multiple sequence alignment