Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHQ31_RS00325 Genome accession   NZ_CP074441
Coordinates   62394..62930 (+) Length   178 a.a.
NCBI ID   WP_213409062.1    Uniprot ID   -
Organism   Weissella ceti strain CECT 7719     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 57394..67930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHQ31_RS00300 (KHQ31_00300) purR 57793..58644 (+) 852 WP_213409059.1 pur operon repressor -
  KHQ31_RS00305 (KHQ31_00305) glmU 58685..60079 (+) 1395 WP_213409677.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KHQ31_RS00310 (KHQ31_00310) - 60217..61221 (+) 1005 WP_213409060.1 ribose-phosphate diphosphokinase -
  KHQ31_RS00315 (KHQ31_00315) - 61305..61898 (+) 594 WP_213409061.1 DUF1054 family protein -
  KHQ31_RS00320 (KHQ31_00320) rpsF 62045..62341 (+) 297 WP_009495699.1 30S ribosomal protein S6 -
  KHQ31_RS00325 (KHQ31_00325) ssb 62394..62930 (+) 537 WP_213409062.1 single-stranded DNA-binding protein Machinery gene
  KHQ31_RS00330 (KHQ31_00330) rpsR 62977..63222 (+) 246 WP_009495697.1 30S ribosomal protein S18 -
  KHQ31_RS00345 (KHQ31_00345) yycF 64032..64736 (+) 705 WP_213409063.1 response regulator YycF -
  KHQ31_RS00350 (KHQ31_00350) walK 64804..66663 (+) 1860 WP_213409064.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19248.82 Da        Isoelectric Point: 4.6085

>NTDB_id=564922 KHQ31_RS00325 WP_213409062.1 62394..62930(+) (ssb) [Weissella ceti strain CECT 7719]
MINRVVLVGRLTRDVELRYTTSGAAVGTFSLAVNRQFTNANGEREADFINCVIWRKSAENFANFTSKGSQVAVEGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEQRRASTGNTAPAGNQNNNFGGQQNANAQSNPFGAPASNGGNVFNASSSSN
DPFGGGQEIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=564922 KHQ31_RS00325 WP_213409062.1 62394..62930(+) (ssb) [Weissella ceti strain CECT 7719]
ATGATTAATCGTGTTGTATTGGTTGGACGTTTGACACGTGATGTTGAACTACGTTATACAACTTCAGGTGCAGCAGTTGG
TACATTCTCATTGGCGGTTAACCGTCAATTCACGAATGCCAATGGTGAACGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGTAAGTCAGCAGAAAACTTTGCGAACTTTACTTCAAAGGGGTCACAAGTTGCTGTTGAAGGACGACTACAAACACGT
AATTACGAGAACCAACAAGGACAACGTGTCTACGTGACTGAAGTTGTTGTTGATAACTTCTCATTGTTGGAGAGTCGTGC
TGAAAGCGAGCAACGCCGTGCTTCTACTGGAAACACAGCGCCTGCTGGTAATCAAAACAATAATTTTGGTGGTCAACAAA
ACGCTAACGCACAATCTAACCCATTCGGTGCACCTGCATCAAATGGTGGGAATGTGTTTAATGCGTCAAGTTCATCAAAT
GATCCTTTCGGTGGTGGTCAAGAAATTGATATTTCTGACGACGACCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

70.95

100

0.713
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.676

100

0.579