Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   J5O00_RS11810 Genome accession   NZ_CP074415
Coordinates   2457560..2458963 (-) Length   467 a.a.
NCBI ID   WP_029862075.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 64     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2452560..2463963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS11775 moaE 2453133..2453588 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  J5O00_RS11780 moaD 2453590..2453847 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  J5O00_RS11785 moaC 2453844..2454323 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  J5O00_RS11790 moaB 2454350..2454862 (-) 513 WP_005482393.1 molybdenum cofactor biosynthesis protein B -
  J5O00_RS11795 moaA 2454964..2455953 (-) 990 WP_029804899.1 GTP 3',8-cyclase MoaA -
  J5O00_RS11800 - 2456249..2457142 (+) 894 WP_005494500.1 YvcK family protein -
  J5O00_RS11805 luxU 2457219..2457557 (-) 339 WP_025500803.1 quorum-sensing phosphorelay protein LuxU -
  J5O00_RS11810 luxO 2457560..2458963 (-) 1404 WP_029862075.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  J5O00_RS11815 uvrB 2459252..2461282 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  J5O00_RS11825 rsxA 2462273..2462851 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  J5O00_RS11830 rsxB 2462855..2463451 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52201.77 Da        Isoelectric Point: 6.2547

>NTDB_id=564777 J5O00_RS11810 WP_029862075.1 2457560..2458963(-) (luxO) [Vibrio parahaemolyticus strain 64]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSVASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=564777 J5O00_RS11810 WP_029862075.1 2457560..2458963(-) (luxO) [Vibrio parahaemolyticus strain 64]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTTGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCATGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGAAAAGCAACTAAACTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGTCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGTTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.277

95.931

0.837
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368