Detailed information NTG0564753

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KHW14_RS22640
• Genome accession: NZ_CP074412
• Coordinates: 5176133..5177473 (+)
• Length: 446 a.a.
• NCBI ID: WP_029243827.1
• Uniprot ID: A0AA46VTB4
• Organism: Pseudomonas viridiflava strain U625
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5171133..5182473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHW14_RS22615 (KHW14_22615)	pgeF	5171326..5172054 (-)	729	WP_213673920.1	peptidoglycan editing factor PgeF	-
KHW14_RS22620 (KHW14_22620)	rluD	5172051..5173013 (-)	963	WP_004884074.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KHW14_RS22625 (KHW14_22625)	-	5173163..5174185 (+)	1023	WP_004884073.1	outer membrane protein assembly factor BamD	-
KHW14_RS22630 (KHW14_22630)	-	5174309..5174548 (+)	240	WP_122407874.1	PP0621 family protein	-
KHW14_RS22635 (KHW14_22635)	pilS	5174538..5176130 (+)	1593	WP_213673921.1	ATP-binding protein	Regulator
KHW14_RS22640 (KHW14_22640)	pilR	5176133..5177473 (+)	1341	WP_029243827.1	sigma-54 dependent transcriptional regulator	Regulator
KHW14_RS22645 (KHW14_22645)	thiO	5177905..5179017 (-)	1113	WP_213673922.1	glycine oxidase ThiO	-
KHW14_RS22650 (KHW14_22650)	-	5179045..5179446 (-)	402	WP_213673923.1	type IV pilin protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49988.25 Da
• Isoelectric Point: 6.4269

>NTDB_id=564753 KHW14_RS22640 WP_029243827.1 5176133..5177473(+) (pilR) [Pseudomonas viridiflava strain U625]
MTPRQKILIVDDEPDIRELLEITLGRMKLDTRSACNVAEARQYLAREAFDLCLTDMRLPDGNGLELVQHIQQNFAHVPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLGRLRELVNSALRLTPVVQPIRALDNRLLGDSPPMRILRSQIAKLARSQAPV
YISGESGSGKELVARLIHEQGPRGEKPFVPVNCGAIPSDLMESEFFGHRKGSFTGAHEDKPGLFQAAQNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAI
VLQRLATNSGLPAARLDAQALDTLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESARPQESDGPNLADIDNLE
DYLEGIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=564753 KHW14_RS22640 WP_029243827.1 5176133..5177473(+) (pilR) [Pseudomonas viridiflava strain U625]
ATGACCCCACGGCAAAAGATCCTGATCGTCGATGATGAGCCGGACATTCGCGAACTCTTGGAGATCACTCTGGGCCGGAT
GAAGCTCGACACCCGCAGCGCCTGCAATGTCGCCGAGGCACGCCAGTATCTGGCTCGCGAAGCATTCGACCTGTGCCTGA
CGGACATGCGCCTGCCGGATGGCAACGGCCTGGAGCTGGTGCAGCATATCCAGCAGAACTTCGCTCACGTCCCGGTGGCG
ATGATCACCGCGCATGGCAGTCTGGACACCGCTATCCACGCGCTCAAGGCCGGTGCGTTCGACTTCCTGACCAAGCCGGT
GGACCTCGGTCGCCTGCGTGAGCTGGTCAACAGCGCGCTGCGCCTTACGCCCGTCGTGCAGCCTATACGCGCTCTGGACA
ACCGCCTGCTGGGCGATTCGCCGCCCATGCGCATACTGCGCAGCCAGATCGCCAAACTGGCGCGCAGTCAGGCCCCCGTT
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCAGGTTGATTCACGAACAAGGGCCACGCGGAGAGAAACC
CTTCGTGCCGGTCAACTGCGGCGCCATTCCTTCCGACCTGATGGAAAGCGAATTCTTCGGGCATCGCAAAGGCAGCTTCA
CCGGTGCCCATGAAGACAAGCCGGGGCTGTTCCAGGCGGCGCAGAACGGCACGCTGTTTCTAGACGAGGTGGCCGATCTG
CCGCTGGCCATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGTCCATCCGCAGCGTTGGCGGCCAGCAGGAACAGGT
GGTGGATGTACGGATTCTCTGTGCAACCCATAAGGACCTGAACGTAGAGGTGGCCGCAGGACGCTTCCGGCAGGATTTGT
ATTACCGATTGAACGTCATCGAGTTGCGCGTACCGTCGCTGCGTGAGCGTCGTGAAGACATCGACCAACTGGCCGCCATC
GTCCTGCAGCGTCTGGCGACCAACAGCGGGCTGCCCGCCGCCAGACTCGACGCCCAGGCACTGGATACGCTGAAAAACTA
TCGTTTTCCCGGCAACGTTCGTGAGCTGGAGAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGACGAAATCCATG
CGTCCGACCTGCGCCTGACCGAGTCTGCAAGACCACAGGAAAGCGACGGCCCGAACCTGGCCGACATCGACAATCTGGAA
GATTACCTGGAAGGCATCGAGCGCAAACTGATTCTTCAGGCCCTGGAAGAAACCCGCTGGAACCGCACAGCGGCAGCCCA
GCGACTGAGCCTGTCATTCAGGTCCATGCGTTATCGGTTGAAGAAGCTGGGACTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.684	99.327	0.791
pilR	Acinetobacter baumannii strain A118	49.676	100	0.516