Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KHW14_RS22635 Genome accession   NZ_CP074412
Coordinates   5174538..5176130 (+) Length   530 a.a.
NCBI ID   WP_213673921.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain U625     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5169538..5181130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW14_RS22615 (KHW14_22615) pgeF 5171326..5172054 (-) 729 WP_213673920.1 peptidoglycan editing factor PgeF -
  KHW14_RS22620 (KHW14_22620) rluD 5172051..5173013 (-) 963 WP_004884074.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KHW14_RS22625 (KHW14_22625) - 5173163..5174185 (+) 1023 WP_004884073.1 outer membrane protein assembly factor BamD -
  KHW14_RS22630 (KHW14_22630) - 5174309..5174548 (+) 240 WP_122407874.1 PP0621 family protein -
  KHW14_RS22635 (KHW14_22635) pilS 5174538..5176130 (+) 1593 WP_213673921.1 ATP-binding protein Regulator
  KHW14_RS22640 (KHW14_22640) pilR 5176133..5177473 (+) 1341 WP_029243827.1 sigma-54 dependent transcriptional regulator Regulator
  KHW14_RS22645 (KHW14_22645) thiO 5177905..5179017 (-) 1113 WP_213673922.1 glycine oxidase ThiO -
  KHW14_RS22650 (KHW14_22650) - 5179045..5179446 (-) 402 WP_213673923.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58401.52 Da        Isoelectric Point: 6.9006

>NTDB_id=564752 KHW14_RS22635 WP_213673921.1 5174538..5176130(+) (pilS) [Pseudomonas viridiflava strain U625]
MTAEPLSLGTAQAQRILRLYHLYRLVIGVLLVSLISSSLDTELLQMANPNLFRAGCWLYLVSNILVVVLLERPSRQSHLF
SLALADAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISLGTPSVSSDYVQAGLLG
AMCFAAAMLVQALTARMLNSEVLAKQRAADVDNLEELNALILQRMRTGILVLDARRQVLLANQGALNLLGHEQLVGEVID
HYCPQLVDRLRHWLINPVMVPRSLSTSAIGPELQPSFAAVNRGDQLQTLIFLEDLSQVAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELTVPDRRLGQIIHDQSRRINLVIENVLQLSRRREAQREVLDLKYWLEAFVAEFRSTALSD
QRVETEIGVGMLTTRMDPEQLNQVVTNLLQNGLRYSRQHHSTAQVLLRLYHDQKSDLPTLEVLDDGPGVSEKHLSRLFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYAPREGGGSCMRITFAHPFKPS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=564752 KHW14_RS22635 WP_213673921.1 5174538..5176130(+) (pilS) [Pseudomonas viridiflava strain U625]
GTGACCGCTGAGCCCCTTTCGCTCGGCACCGCCCAAGCGCAACGGATCCTGCGGCTTTATCACCTTTATCGCCTCGTCAT
CGGTGTCCTGCTGGTATCGCTGATTTCCAGCAGCCTGGACACCGAACTGTTGCAGATGGCCAACCCGAACCTGTTTCGCG
CAGGCTGCTGGCTGTATCTGGTGTCCAATATCCTGGTGGTGGTGCTGCTGGAGCGGCCGAGCCGCCAGTCTCACCTTTTC
AGCCTGGCGCTGGCAGACGCGATCATGCTGTCTGGCCTTTTCTATGCGGCCGGAGGCCCTTCCAGCGGTATAGGCAACCT
GCTGATCGCGTCGGTCGCGATCAGTAATGTACTGTTGCGGGGCCGCATCGGGCTGCTGATCGCGGCCGTCTCGGCCATCG
GCATCATTTACCTCACCTTCTACATCAGCCTCGGGACGCCATCGGTTTCCAGCGACTACGTGCAGGCTGGGTTGCTGGGC
GCCATGTGCTTCGCTGCCGCTATGCTGGTCCAGGCACTCACGGCGCGCATGTTGAACAGCGAAGTGTTGGCCAAGCAGCG
TGCTGCCGATGTCGATAACCTTGAAGAACTCAACGCCCTGATTCTGCAACGCATGCGCACCGGCATTCTGGTACTGGATG
CGCGCCGTCAGGTGTTGCTGGCCAATCAGGGCGCGCTGAACCTGCTCGGGCATGAGCAACTGGTCGGCGAAGTGATCGAC
CATTACTGCCCGCAATTGGTGGATCGCCTGCGCCACTGGCTGATCAACCCGGTCATGGTGCCGCGCAGTCTCTCGACTTC
TGCCATCGGGCCAGAGCTGCAACCCAGCTTTGCGGCGGTAAACCGGGGCGATCAATTGCAGACCCTGATTTTCCTGGAGG
ACCTGTCGCAGGTCGCCCATCAGGCCCAGCAGCTCAAGCTCGCCGCACTGGGCCGCCTCACCGCCGGCATCGCTCATGAA
ATCCGCAACCCGCTCGGCGCAGTCAGCCATGCGGCGCAGTTGCTGAACGAGTCGGAAGAATTGACAGTACCGGACCGTCG
CTTGGGGCAGATCATTCATGACCAGTCACGGCGGATCAATCTGGTCATCGAGAACGTGCTGCAACTGTCCAGACGACGTG
AAGCCCAGCGTGAGGTGCTTGACCTGAAATACTGGCTGGAAGCCTTTGTTGCGGAGTTTCGCAGCACCGCCCTGTCTGAC
CAGCGGGTCGAGACCGAAATCGGTGTCGGCATGCTGACCACGCGCATGGACCCCGAGCAGTTGAATCAGGTGGTCACCAA
CCTGCTGCAGAACGGCCTGCGCTACAGTCGTCAGCACCACTCCACCGCACAGGTGCTGCTGAGGCTGTATCACGATCAGA
AAAGCGATCTGCCGACGCTGGAGGTCCTTGATGACGGCCCCGGCGTCAGCGAGAAGCACCTGAGCAGATTGTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGGACGGGCCTTGGCCTCTACCTGTCGCGCGAGTTATGCGAAAGCAATCAGGCCCACCT
GGACTACGCCCCTCGGGAAGGCGGCGGCAGTTGCATGCGGATTACCTTCGCCCACCCGTTCAAACCGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615