Detailed information NTG0564651

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KHW12_RS03605
• Genome accession: NZ_CP074409
• Coordinates: 811116..811988 (-)
• Length: 290 a.a.
• NCBI ID: WP_129430362.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain KF529
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 806116..816988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHW12_RS03575 (KHW12_03575)	-	806607..807236 (-)	630	WP_032661060.1	DUF1780 domain-containing protein	-
KHW12_RS03580 (KHW12_03580)	-	807362..807829 (+)	468	WP_032661062.1	hypothetical protein	-
KHW12_RS03585 (KHW12_03585)	-	808120..809592 (+)	1473	WP_032661065.1	tetratricopeptide repeat protein	-
KHW12_RS03590 (KHW12_03590)	-	809699..810157 (+)	459	WP_010415567.1	hypothetical protein	-
KHW12_RS03595 (KHW12_03595)	yacG	810290..810499 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
KHW12_RS03600 (KHW12_03600)	coaE	810496..811119 (-)	624	WP_213630279.1	dephospho-CoA kinase	-
KHW12_RS03605 (KHW12_03605)	pilD	811116..811988 (-)	873	WP_129430362.1	A24 family peptidase	Machinery gene
KHW12_RS03610 (KHW12_03610)	pilC	811990..813207 (-)	1218	WP_024663008.1	type II secretion system F family protein	Machinery gene
KHW12_RS03615 (KHW12_03615)	pilB	813210..814904 (-)	1695	WP_024663009.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KHW12_RS03620 (KHW12_03620)	-	815132..815554 (+)	423	WP_024663010.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
KHW12_RS03625 (KHW12_03625)	-	815649..816194 (-)	546	WP_004415097.1	DUF1523 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31979.16 Da
• Isoelectric Point: 8.3734

>NTDB_id=564651 KHW12_RS03605 WP_129430362.1 811116..811988(-) (pilD) [Pseudomonas syringae strain KF529]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRIPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLGWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=564651 KHW12_RS03605 WP_129430362.1 811116..811988(-) (pilD) [Pseudomonas syringae strain KF529]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCCTGGCCTTCGTCACCACCTGCTGCATCCTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGGTCGTCTACCGCATCCCGATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGCGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAGCCCGTCTTCAACCTGAACCGCCCCCGTTCCAGCTGCCCGCATTGCGCACACAAAATCCGC
CCATGGGAAAACCTGCCGGTCATCAGCTATCTGCTGCTGCGCGGCAAATGCTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTATCCGCTGGTCGAGCTGACCTGCGCAGTGTTGTCGGCATACGTGGCCTGGCATTTCGGGTTCGGCTGGCAGGCGGCGG
CGATGCTGGTATTGGGCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGTTGTTACCTGATTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCCTTCGGGCTGTTCACATCGCTGAACGATGCGCTTTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTTACAGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTGGGCGCGTGGGGCGGCTGGCAGATTTTGCCGCTGACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGTGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.65	97.586	0.514
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	51.825	94.483	0.49
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476